barSeed - Barley Seed Development Database

Probe CUST_16430_PI390587928

Source Contig U35_10210

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16430_PI390587928	Hv_44K_v2	AGGCTCAAGAAGATGCTCGCCAGCATGTGCTTCCGGCTGTACAACAAGAAGGGCGACATC	546	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369390	2500	2e-24	1393 - 1452	100	60 / 60	plus	ABC10142
MLOC	MLOC_55071.4	4149	2e-24	1629 - 1688	100	60 / 60	plus	ABC10142 ABC15138
MLOC	MLOC_55071.2	3530	2e-24	1472 - 1531	100	60 / 60	plus	ABC10142 ABC15138
MLOC	MLOC_55071.1	2720	2e-24	1698 - 1757	100	60 / 60	plus	ABC10142
MLOC	MLOC_55071.3	3435	2e-24	1475 - 1534	100	60 / 60	plus	ABC10142 ABC15138
JLOC1	JLOC1_35495.1	4123	8e-25	2462 - 2521	100	60 / 60	minus
JLOC1	JLOC1_35494.3	3502	8e-25	1453 - 1512	100	60 / 60	plus
JLOC1	JLOC1_35494.2	3528	8e-25	1479 - 1538	100	60 / 60	plus
JLOC1	JLOC1_35494.1	3548	8e-25	1499 - 1558	100	60 / 60	plus
Harvest21	ABC20824	732	3e-25	547 - 606	100	60 / 60	plus
Harvest35	U35_10210	734	3e-25	547 - 606	100	60 / 60	plus

Contig Sequence (734 bp)

>U35_10210 734 Hv_44K_v2
CGCAACGTGCCCTACGACTGGATCAACAGCCAGAAGTCGAACCAGCACTGGCTGCGCAAG
GACGGCGACCGCTTCACCTTCCCCGGCGGCGGCACCATGTTCCCCAACGGCGTCGGCGCC
TACGTCGACCTCATGGCCGACCTGGTCCCCGGCATGAAGGACGGCAGCGTCCGCACCGCG
CTCGACACGGGCTGCGGCGTCGCCAGCTGGGGCGGCGACCTGCTGGCCCGCGACATCCTG
ACCGTGTCGCTGGCGCCCAGGGACAACCACGAGGCGCAGGTGCAGTTCGCGCTGGAGCGC
GGCATCCCGGCCATCCTCGGCATCATCTCCACGCAGCGCCTGCCCATCCCGTCGGCCTCC
ATGGACATGGCGCACTGCTCCCGGTGCCTCATCCCGTGGACGGAGTTCGGGGGGCTCTAC
CTGATGGAGATCCAGCGGGTGCTCCGGCCGGGCGGCTTCTGGGTGCTCTCCGGCCCGCCC
ATCAACTACGAGAACCGGTGGCACGGCTGGAACACCACCGTGGAGGCGCAGAAGGCCGAC
TTCGACAGGCTCAAGAAGATGCTCGCCAGCATGTGCTTCCGGCTGTACAACAAGAAGGGC
GACATCGCCGTGTGGCAGAAGTCCCTCGACGCCGGCTGCTACGACAAGCTGACGCCGGTG
ACCACCCCGGCCAAGTGCGACGACAGCGTCGACCCGGACGCGGCCTGGTACGTGCCCATG
CGCTCCTGCGTGAC

Homology of Contig U35_10210 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g36690.5	561	6e-91	protein\|dehydration response related protein, putative, expressed
Brachypodium v1_2	Bradi3g21597.1	583	7e-175
Arabidopsis v10	AT4G19120.1	600	7e-143	\| Symbols: ERD3 \| S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr4:10460665-10463034 REVERSE LENGTH=600