- Probe CUST_16429_PI390587928
- Source Contig U35_10211
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_16429_PI390587928 | Hv_44K_v2 | ACAGGCAGCTTGCACAGCAAAGGAATTACGTGAAATTTTAGGTTTAAAAAATGTCAATGT | 810 | GeneList: lightsteelblue1 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 3.031 | 1.556 | 1.154 | 0.761 | 0.781 | 0.695 |
| Raw | 27.005 | 19.523 | 13.705 | 13.145 | 2.854 | 3.372 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_15898.4 | 2050 | 2e-24 | 836 - 895 | 100 | 60 / 60 | plus | ABC20894 |
| MLOC | MLOC_15898.3 | 2159 | 2e-24 | 1295 - 1354 | 100 | 60 / 60 | plus | ABC20894 |
| MLOC | MLOC_15898.1 | 1561 | 2e-24 | 846 - 905 | 100 | 60 / 60 | plus | ABC20894 |
| MLOC | MLOC_15898.5 | 1702 | 2e-24 | 548 - 607 | 100 | 60 / 60 | plus | ABC20894 |
| MLOC | MLOC_15898.2 | 1448 | 2e-24 | 849 - 908 | 100 | 60 / 60 | plus | ABC20894 |
| MLOC | MLOC_59788.8 | 2154 | 7e-23 | 1556 - 1615 | 98 | 59 / 60 | plus | ABC20894 |
| MLOC | MLOC_59788.10 | 2304 | 7e-23 | 1032 - 1091 | 98 | 59 / 60 | plus | ABC20894 |
| MLOC | MLOC_59788.20 | 1264 | 7e-23 | 45 - 104 | 98 | 59 / 60 | plus | ABC20894 |
| MLOC | MLOC_59788.6 | 2220 | 7e-23 | 1044 - 1103 | 98 | 59 / 60 | plus | ABC20894 |
| MLOC | MLOC_59788.17 | 1556 | 7e-23 | 337 - 396 | 98 | 59 / 60 | plus | ABC20894 |
| JLOC1 | JLOC1_10934.8 | 1862 | 8e-25 | 583 - 642 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_10934.7 | 1858 | 8e-25 | 583 - 642 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_10934.6 | 2544 | 8e-25 | 1302 - 1361 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_10934.5 | 2088 | 8e-25 | 846 - 905 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_10934.4 | 2125 | 8e-25 | 846 - 905 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_10934.3 | 2129 | 8e-25 | 850 - 909 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_10934.2 | 2125 | 8e-25 | 850 - 909 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_10934.1 | 2581 | 8e-25 | 1302 - 1361 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38924.5 | 2365 | 4e-23 | 1064 - 1123 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_38924.4 | 2369 | 4e-23 | 1064 - 1123 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC19963 | 869 | 1e-24 | 811 - 869 | 100 | 59 / 59 | plus | |
| Harvest35 | U35_10211 | 870 | 3e-25 | 811 - 870 | 100 | 60 / 60 | plus |
Contig Sequence (870 bp)
>U35_10211 870 Hv_44K_v2 CCCTCCCGCACGAATTCGCCTCGGCGGGTCTCGACTCGATCGATCCCCTTTCTGCCGCCA CCACCGCCGGCGGCAGCGGCTGTTCCCACCTCTCCGGGCGCGTCGCCAGCCACGTGGGTG CTCGGAGATGGGCGGCGGGCTTCTTCTTCCCCGCACGAGGAGTCTGATGCTGTTCCTGCG GGCGAGGGGCTACTCCGCCACCGCCGGTTCTTCGCGCGGCCCGCTCCACGTGTGCGTCGT CGGCAGCGGCCCCGCCGGATTCTACACGGCCGAAAAGATGCTAAAGGGTCACGAAAGAGT GCAAGTGGATATTATTGACAGGTTGCCGACACCGTTTGGCTTAGTTCGTTCTGGAGTGGC TCCAGATCATCCAGAAACAAAGATTGTGGTAAACCAATTTTCTCGTGTAGCTGCGAATCC CCGCTGCTCTTTTTTTGGGAATGTTACACTTGGAAGTGATGTATCTCTATCAGAGCTACG GAAGACATATGATGTTGTTGTTCTTGCTTATGGTGCAGAAAGTGATAGATCATTTGGTAT TCCTGGGGAGGACCTCAGAGGAATACATTCTGCTCGAGAGTTTGTATGGTGGTATAATGG GCACCCAGACATGTGCAACTTGGCACCTGACTTGACAAACACAGATTCTGCTGTGGTCCT TGGACAGGGAAATGTTGCGCTTGATGTTGCCCGCATTCTTCTCCGCTGTACAACCGAGTT GGCTTCCACTGATATTGCTGGTTATGCTTTGGATGCTCTCCGTAGCAGCACAATAAGGAA GGTTTACTTGGTTGGGCGACGAGGCCCANTACAGGCAGCTTGCACAGCAAAGGAATTACG TGAAATTTTAGGTTTAAAAAATGTCAATGT
Homology of Contig U35_10211 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os02g17700.1 | 500 | 4e-143 | protein|pyridine nucleotide-disulphide oxidoreductase domain containing protein, expressed |
| Brachypodium v1_2 | Bradi2g32530.1 | 498 | 7e-152 | |
| Arabidopsis v10 | AT4G32360.1 | 483 | 2e-117 | Pyridine nucleotide-disulphide oxidoreductase family protein | chr4:15621550-15624711 FORWARD LENGTH=483 |