barSeed - Barley Seed Development Database

Probe CUST_1641_PI390587928

Source Contig U35_14052

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1641_PI390587928	Hv_44K_v2	TGGCTCAGGTTTACCCTCTTGCCTATTTTTCATTGACAACATTTGTCAGTATATCGCTTC	1722	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.321	1.535	1.095	0.789	0.333	0.352
Raw	12321.333	22059.070	13935.933	15738.007	2346.510	2713.243

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66505.2	1899	2e-24	1806 - 1865	100	60 / 60	plus	ABC05892 ABC05893
MLOC	MLOC_66505.1	1965	2e-24	1886 - 1945	100	60 / 60	plus	ABC05892 ABC05893
JLOC1	JLOC1_43831.1	2157	8e-25	1964 - 2023	100	60 / 60	plus
Harvest21	ABC05892	1911	3e-25	1819 - 1878	100	60 / 60	plus	ABC05892
Harvest35	U35_14052	1828	3e-25	1723 - 1782	100	60 / 60	plus

Contig Sequence (1828 bp)

>U35_14052 1828 Hv_44K_v2
CGACCCCGACCCCGACCCCGCCTCGTCCCTCACCGCCGGACGCCGCCGTCCCCCAACCCA
TCCCCGCGCTCCCCTCCGCACGCCGTTTCAATCATGGCACGCCGAGGATTGATGGAGCAG
GACCTAACCAAGCTTGATGTCACCAAGCTCCACCCGTTGTCACCCGAAGTTATCTCGCGC
CAAGCTACGATCAACATTGGTACAATTGGTCACGTGGCACATGGAAAGTCTACTGTTGTG
AAAGCTATATCCGGAGTTCAGACTGTTCGCTTCAAGAATGAGCTTGAACGTAACATCACT
ATCAAGCTGGGCTACGCTAATGCAAAAATCTACAAATGTGAGGATGACAGATGCCCACGA
CCAATGTGTTACAAGGCTTATGGAAGCGGAAAAGAAGATACTCCTGCCTGTGATGTTCCT
GGGTTTGAAAACACTAGGATGAAGCTCCTGAGACATGTTTCCTTTGTTGATTGCCCGGGC
CACGACATTCTCATGGCTACAATGCTTAATGGAGCAGCTATCATGGATGGAGCCTTGCTT
TTGATAGCAGCAAATGAAAGCTGCCCACAACCCCAGACGTCTGAGCATCTTGCAGCTGTT
GAAATCATGCGTCTCCAGCATCTCATTATTTTGCAGAATAAGATTGATCTTATCCAGGAA
AGTGCAGCAATGAACCAGCATGAAGCAATCCAAAAGTTTATCCAGGGCACGATAGCTGAA
GGTGCTCCTGTGGTGCCAATATCTGCCCAGCTGAAGTACAACATTGATGTGATCTGTGAA
TATATTATTAAGAAAATCCCCATTCCGGAAAGGAACTTCACTTCACCTCCCAACATGATT
GTTATTCGCTCCTTTGATGTCAACAAGCCTGGTTCAGAGGTTGATGAAATTAGGGGTGGG
GTAGCAGGTGGAAGTATCCTCAGGGGAGTCCTCAGGGTGAACCAGAATATTGAAGTTCGC
CCTGGCATTGTCATGAAGGATGAGAGTGGCAACATCAAATGCACCCCAATCTATTCAAGG
ATTGTCTCGCTCTATGCTGAGCAGAATGAACTCCAATTTGCTGTGCCAGGAGGGCTTATC
GGTGTGGGAACCACCATGGATCCAACTTTGACTCGTGCCGACAGGCTGGTTGGCCAGGTT
CTAGGAGAAATCGGGTCGCTTCCCGATGTTTTCGTGGAGCTTGAGATCAACTTCTTCCTT
CTCCGAAGGCTGCTGGGGGTGAGAACAAAGGGTACAGAGAAGGCAGGGAAGGTCTCCAAG
CTCACGAAGGGTGAGATCCTGATGCTTAACATCGGATCCATGTCCACCGGTGCCCGTGTG
GTCGCCGTGAAGAACGATCTCGCCAAGCTCCAGCTAACCGCGCCCGTCTGCACAAGCAAA
GGCGAGAAGGTCGCGCTGAGTCGCCGTGTCGAGAAGCATTGGCGCCTCATCGGATGGGGC
CAGATCCAAGCCGGAGCGACCCTCGAAGTTCCACCCTGCCCGCTCTGAAGAAAAAAAAAA
GGCGCACAGCTTGCGAAACAAGAGAGGCGAAATGTGGGAGGGCAGAGAGCTCCTAGGTAC
AGTTTTTGTGAGGTGGAGGAGAAAACATTATGAGTCTGGAAGTCTTGTCGTCGCGGGATT
TGTCTACGCTACTAGTTTGCCTTTCTCTTTGTCTGAATTTAGGATTTGTTATACTTGCTG
TGTTACCATGGCCGTGGTCAGTAGGCGAGGAACCTACTACTTTGGCTCAGGTTTACCCTC
TTGCCTATTTTTCATTGACAACATTTGTCAGTATATCGCTTCTAATTTTACTCAGCTTAA
AAAAAAAAAAAAAAAATCTCGAGGGGGG

Homology of Contig U35_14052 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os12g41400.1	465	protein\|eukaryotic translation initiation factor 2 subunit gamma, putative, expressed
Brachypodium v1_2	Bradi4g02587.1	465
Arabidopsis v10	AT1G04170.1	465	\| Symbols: EIF2 GAMMA \| eukaryotic translation initiation factor 2 gamma subunit \| chr1:1097423-1099702 FORWARD LENGTH=465