barSeed - Barley Seed Development Database

Probe CUST_16419_PI390587928

Source Contig U35_10221

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16419_PI390587928	Hv_44K_v2	TCAAACAACAAGATTCAGGTACTGGTATGCACTAGCACACTGGCTTGGGGTGTCAATCTT	948	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5747.2	3150	2e-24	2431 - 2490	100	60 / 60	plus	ABC14382
MLOC	MLOC_5747.1	3199	2e-24	2518 - 2577	100	60 / 60	plus	ABC14382
JLOC1	JLOC1_3714.1	3111	8e-25	2427 - 2486	100	60 / 60	plus
Harvest21	ABC18915	1008	3e-25	949 - 1008	100	60 / 60	plus
Harvest35	U35_10221	1008	3e-25	949 - 1008	100	60 / 60	plus

Contig Sequence (1008 bp)

>U35_10221 1008 Hv_44K_v2
GATTTGTACAGATTTACCCATTTCAATCCGATACAAACACAGGCTTTCCATGTTCTTTAT
CACACTGAAACCAATGTGCTCTTGGGAGCACCAACCGGGAGTGGCAAGACAATTTCTGCA
GAACTAGCAATGCTTCATCTTTTCAATACCCAACCGGACATGAAGGTAGTTTACATTGCT
CCTCTAAAGGCTATAGTGCGAGAACGAATGAATGATTGGAGACATCGGCTTGTAACTCAG
CTTGGGAAGAAGATGGTTGAAATGACTGGTGATTTTACACCAGACATGGTGGCCCTATTA
TCAGCTGATATCATAATTTCGACCCCCGAAAAATGGGATGGGATTAGTCGCAGTTGGCAC
AGTAGAAGTTATGTTATGAAGGTTGGACTCATGATATTAGATGAGATACATCTTCTTGGA
GCTGACCGTGGGCCTATTCTTGAGGTCATCGTATCAAGAATGCGATACATATCATCACAA
ACGGAGCGTTCAATTCGGTTTGTTGGTTTATCAACAGCATTAGCCAATGCTCGTGACTTG
GCCGATTGGTTGGGCGTCAGAGATGATGGTCTGTTTAATTTCAAGCCCAGCGTGAGACCT
GTACCTCTTGAAGTGCATATTCAGGGATATCCTGGGAAATTCTACTGCCCGAGAATGAAT
AGCATGAACAAACCAGCATATGCAGCCATATGTACTCATTCACCTGATAAACCAGTTCTC
ATTTTTGTGTCATCACGTCGACAGACGAGACTTACAGCTCTTGATCTCATTCAGCTTGCA
GCATCTGATGAGAAACCAACACAGTTCCTCAGCATGGCAGATAACTCTCTAGACATGATT
CTTTCACAAGTCACTGATAGCAATTTGAGACATACACTTCAGTTTGGAATAGGTCTGCAT
CATGCAGGTCTAAATGATAGAGATAGGTCCTTGGTTGAGGAACTCTTTTCAAACAACAAG
ATTCAGGTACTGGTATGCACTAGCACACTGGCTTGGGGTGTCAATCTT

Homology of Contig U35_10221 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g11470.1	1127	0.0	protein\|DEAD/DEAH box helicase domain containing protein, expressed
Brachypodium v1_2	Bradi1g70057.1	2022	4e-140
Arabidopsis v10	AT5G61140.2	2157	0.0	U5 small nuclear ribonucleoprotein helicase \| chr5:24589999-24603311 FORWARD LENGTH=2157