barSeed - Barley Seed Development Database

Probe CUST_16417_PI390587928

Source Contig U35_10223

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16417_PI390587928	Hv_44K_v2	TGTGGTGAGTTTCTGGTCGTGTCAGGCAGTGTTTGGATGATGACATGAGACAGATCTAAA	319	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60848.5	1714	2e-24	1654 - 1713	100	60 / 60	plus	ABC21171
MLOC	MLOC_60848.3	2133	2e-24	2024 - 2083	100	60 / 60	plus	None
MLOC	MLOC_60848.1	2272	2e-24	1936 - 1995	100	60 / 60	plus	ABC21171
MLOC	MLOC_60848.4	1845	2e-24	1736 - 1795	100	60 / 60	plus	None
JLOC1	JLOC1_39718.2	2154	8e-25	1966 - 2025	100	60 / 60	plus
JLOC1	JLOC1_39718.1	1879	8e-25	1691 - 1750	100	60 / 60	plus
Harvest35	U35_10223	523	3e-25	320 - 379	100	60 / 60	plus

Contig Sequence (523 bp)

>U35_10223 523 Hv_44K_v2
GCAGGACATGAACATGGACATGGACACGATCCTCCTACTTTTGCTATTTCTTGGTCTGGG
GGTTTAGTTCCGAATCTTGTTCAGTTTAGCTAATCCATCAATCATAGACGCAATCCATAG
ACGATAGGTAGTCAAACGGCCAGCCGTGGTAGCTTTGTAGCTAGCTGGTAGCTGGTACTC
GAAGCGGCCGGCCATTGTATATTCTTGTGCATGCAGCATGTAACCGTGGACCTCTCCTTT
TGGTTAGCTTCTCTGCCTTTTTTTCTCAAAAGCTAACTATCGGAGAGGAGATAATAGATT
AAGCCGCCGCTGTTGTAGCTGTGGTGAGTTTCTGGTCGTGTCAGGCAGTGTTTGGATGAT
GACATGAGACAGATCTAAAGGCAGGGAGACGCTCCGGCTCTCCCTGTCGGGTGCGTACGT
GTGTAATGTGTATACTTTTCTAACTTTTTTTTATATGCATATACGTTTCAAAGATTGTCC
CTGTCGGCCCTTGGAAAAAAAAAAATAAAAAAAAAAAAAAAAA

Homology of Contig U35_10223 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None