barSeed - Barley Seed Development Database

Probe CUST_16415_PI390587928

Source Contig U35_10225

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16415_PI390587928	Hv_44K_v2	CAAATATAAATCTTCCGAGCCAAGATGGGGACACCGAAGATCGTTTTATGCCTGATAGCA	794	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364155	2286	2e-24	1113 - 1172	100	60 / 60	plus	ABC18581
MLOC	MLOC_81801.1	2197	2e-24	1225 - 1284	100	60 / 60	minus	None
JLOC1	JLOC1_54407.1	1695	8e-25	719 - 778	100	60 / 60	minus
Harvest21	ABC22840	680	3e-25	553 - 612	100	60 / 60	plus
Harvest35	U35_10225	922	3e-25	795 - 854	100	60 / 60	plus

Contig Sequence (922 bp)

>U35_10225 922 Hv_44K_v2
GGTGATGCCCATCTACGACGTCGAGGGCGTTTCCGACGATGAGAGCGACGACAGCGAAGA
AGCCGAGGAGGGCAAAGAGGACGACGGCAGCGAAGGAGGCGAGGACGGCGACGCGGGCGC
AGGTGATGTTGAGGTATGGGACAAATCATATACTGCAAAAATCAAGAGAGCGCAGAGGGC
AGCCAAGCAGGCTGCCGGGGACGATGGCAGCGCGGAAGAGGATGAGGAACCGGAGGATGA
TCCAAGAAACTGGGGTGTAGGGAAGAAGAAATACTATGATGATCATGAGCAAGATGCTGA
TGATGTTGAGTTTGAAGAGATAAGGAGGTTACAGGCAGATAATAAGCTGTCGATGAAAGA
TTTCGGGTTGGAAGATGACGAAAGCGATAAAGAGGATAAGCCCTCGAAGGCGTCCGCCCA
TCAAGTGAAGCTTGCTGATGAGGCATCCCCTCTCGAAAGCTACACGAAGCTGAGAGAAGA
TTTTGCTGTCCTGTCAAAAGACGAGAAGATGGATGTAGTGTACAGCTCAGCTCCTGAACT
GGTTGGCTTACTGGCTGATTTGAATGATGCCCAAGAACAGCTGAAGGCGATAGGACCAGT
CACCAGTGAAGTGGCAGCTGGGCAAGGCAAGGATAAGGGCAGGATGCAGCCATTGGAGGT
GAAGCGAGCTTGTCTGCTGGCTCATTGTCAATCTATTACCTTCTACCTCCTTATGAGAGC
AGAGGGACTGTCTGTGCAGGATCATCCTGTAATTGCTCGGCTGGTAGAGACCAAGAGCAT
GGTACAAAAGCTGGCAAATATAAATCTTCCGAGCCAAGATGGGGACACCGAAGATCGTTT
TATGCCTGATAGCAGCACCCTTGATGTGGTGAATAAGGCAGCCTCTCTGGAGAATGAGGG
CANATCTAGCAATTTGCTAGCT

Homology of Contig U35_10225 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g01510.2	601	9e-77	protein\|sas10/Utp3 family protein, expressed
Brachypodium v1_2	Bradi2g13337.1	635	2e-88
Arabidopsis v10	None