- Probe CUST_16413_PI390587928
- Source Contig U35_10227
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_16413_PI390587928 | Hv_44K_v2 | AACAAACGGTTACCAGTTAGCTAAAATATCATTTTCACGGGCTGTTGATATCTGTATATC | 457 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.443 | 1.902 | 1.003 | 1.101 | 0.613 | 0.543 |
| Raw | 28.173 | 36.122 | 15.243 | 25.252 | 3.967 | 3.631 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_56552.1 | 6869 | 2e-24 | 3389 - 3448 | 100 | 60 / 60 | minus | ABC20728 ABC47683 |
| MLOC | MLOC_56552.3 | 4982 | 2e-24 | 1602 - 1661 | 100 | 60 / 60 | minus | ABC20728 ABC47683 |
| MLOC | MLOC_56552.2 | 7106 | 2e-24 | 3389 - 3448 | 100 | 60 / 60 | minus | ABC20728 ABC47683 |
| MLOC | MLOC_56551.1 | 2495 | 2e-24 | 2264 - 2323 | 100 | 60 / 60 | minus | ABC20728 ABC47683 |
| JLOC1 | JLOC1_36585.3 | 7094 | 8e-25 | 3647 - 3706 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_36585.2 | 7055 | 8e-25 | 3608 - 3667 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_36585.1 | 6978 | 8e-25 | 3531 - 3590 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_36584.1 | 2492 | 8e-25 | 2264 - 2323 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC20728 | 575 | 3e-25 | 61 - 120 | 100 | 60 / 60 | minus | ABC20728 |
| Harvest35 | U35_10227 | 577 | 3e-25 | 458 - 517 | 100 | 60 / 60 | plus |
Contig Sequence (577 bp)
>U35_10227 577 Hv_44K_v2 TTAGTGTCAGAAGGGATCAAACTTCGTCCTTGGAAGAATAGCAGTTTTGTGTATGAACCA TCTTCAGTTGTTATTGGTGTTATAAACTACTTAGAAGAGCAGAGAAATTCACTCCTGGAT CTTCAAGAGAAACACGGCGTAAAGATACCTTGCGAAATAGATACCCAGTTTGCTGGAATG GTTGAAGCTTGGGCGTCAGGGTTGACTTGGAGGGAGATAATGATGGACTCTGCAATGGAT GATGGAGATTTAGCCCGGCTGCTCAGACGAACGATGGACTTACTAGCTCAGATTCCAAAA TTGCCAGATATAGATCCAGCTCTCCAAAAAAACGCACAGATTGCTTGTAGCGTCATGGAT CGAGTACCGCTAAGTGAGCTTGCTGGCTGAAAGCCAGGACATTGTAAGTACTGCATTGGT CATTTGTTGTAGGTAGGCAATTCTTTGTTGTACCATGAACAAACGGTTACCAGTTAGCTA AAATATCATTTTCACGGGCTGTTGATATCTGTATATCAAATTCAATGTCTGGATATATAT AATTGTATCTACTGTTGTCGAAAAAAAAAAAAAAAAA
Homology of Contig U35_10227 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os02g50560.1 | 1180 | 2e-74 | protein|DSHCT domain containing protein, expressed |
| Brachypodium v1_2 | Bradi3g59790.1 | 1180 | 1e-76 | |
| Arabidopsis v10 | AT1G70070.1 | 1171 | 9e-57 | | Symbols: EMB25, PDE317, ISE2 | DEAD/DEAH box helicase, putative | chr1:26390016-26394148 REVERSE LENGTH=1171 |