barSeed - Barley Seed Development Database

Probe CUST_16412_PI390587928

Source Contig U35_10228

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16412_PI390587928	Hv_44K_v2	GGTCCCTGTTGTTTTTTCTTAGTAAAAGAGCAATTAGTTGCATGTATACCCATTTTGGAA	497	GeneList: lightcyan1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.082	0.257	1.051	1.435	1.067	1.666
Raw	2.644	26.152	88.019	178.193	52.438	85.061

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_43332.1	667	8e-25	533 - 592	100	60 / 60	plus
Harvest21	ABC20959	664	3e-25	498 - 557	100	60 / 60	plus	ABC20959
Harvest35	U35_10228	664	3e-25	498 - 557	100	60 / 60	plus

Contig Sequence (664 bp)

>U35_10228 664 Hv_44K_v2
GACGAGAGCTAACGAGGAGGAGAGGCCGGCCGGTCAGAGATCGACCGAGATGCATCGTTC
GTCGAGCTACTACCTGTCATCCTCTTCATCTTCGTCGTCATCGATGGGGGCGGCGTCGGT
GACCGGTGGCCCAAGCGGGAATGCAGGGCTGGACGCTGACCATCTGCCGACGTACGACCC
GCACTCGGACACAGCCAAGAAAGAGGCCCTCGACGCCTGCCGCGCCAACCTTGCCCACAC
ACTCGTCCACCTCGTCCCCATCGTGGTCCTCCTCTCCGGGCTTCTCCTCTGGTCGCTCTC
CACCACCCCCGTTCACCCCACCGAGGTGGGCGTAATTTTGCTAAAGAAGGAAAGACTAAT
GGCGCTGAAGAGTGGGCTCGAGCACAGCTCGAACGGCCCCGGTATGGTGGTTGCGATGGA
GAATCTGGATCCAGCGGGCAACACTGTTGGGAAAAGAATAAAGAAGGACGGACTTAAGAA
ATGAAATGGATGGATGTGGTCCCTGTTGTTTTTTCTTAGTAAAAGAGCAATTAGTTGCAT
GTATACCCATTTTGGAAAATACATTTTCTTAGTAAAAGAGCAAATTAGTTGCATGTATAC
CCATTAAAAAACGACTAAGGATATATAAAAACGATTTTTTTTCTCGATCATTAAAAAAAA
AAAA

Homology of Contig U35_10228 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None