barSeed - Barley Seed Development Database

Probe CUST_1640_PI390587928

Source Contig U35_14053

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1640_PI390587928	Hv_44K_v2	TGCTTGATGTTACCATCTTGTTGTCATCAGCAATCTGAATGGAAGTTGGCTATCAAAAAA	608	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369873	685	9e-22	620 - 674	100	55 / 55	plus	ABC00014 ABC00040 ABC00041 ABC00075 ABC00082 ABC00094 ABC00102 ABC00105 ABC00106 ABC00124 ABC00130 ABC00135 ABC00141 ABC00176 ABC00186 ABC00196 ABC00201 ABC00204 ABC00338 ABC00349 ABC00484 ABC00570 ABC00657 ABC00660 ABC00669 ABC00672 ABC00676 ABC00684 ABC00701 ABC00787 ABC00971 ABC31599 ABC32138 ABC47839
MLOC	MLOC_19889.1	484	9e-22	303 - 357	100	55 / 55	plus	ABC00014 ABC00041 ABC00075 ABC00094 ABC00105 ABC00106 ABC00124 ABC00130 ABC00135 ABC00141 ABC00176 ABC00186 ABC00196 ABC00201 ABC00204 ABC00338 ABC00349 ABC00484 ABC00570 ABC00657 ABC00660 ABC00669 ABC00672 ABC00676 ABC00684 ABC00701 ABC00787 ABC00971 ABC31599 ABC47839
JLOC1	JLOC1_13788.1	463	5e-22	282 - 336	100	55 / 55	plus
Harvest21	ABC00787	679	2e-22	602 - 656	100	55 / 55	plus	ABC00787
Harvest35	U35_14053	679	3e-25	609 - 668	100	60 / 60	plus
Harvest35	U35_36605	563	2e-22	94 - 148	100	55 / 55	minus

Contig Sequence (679 bp)

>U35_14053 679 Hv_44K_v2
TCCATCCATCCATCCCCAAATCTCCCAGCCAAACCAACCCTCTCGCCCCCACCGTCCACC
ACCACCAAGGAAACCCGATGGCCCGCACGAAGCAGACGGCGAGGAAGTCCACCGGCGGCA
AGGCGCCGCGGAAGCAGCTGGCGACCAAGGCGGCGCGCAAGTCGGCCCCGGCCACGGGCG
GCGTCAAGAAGCCGCACCGCTTCCGCCCGGGCACCGTGGCGCTCCGGGAGATCCGCAAGT
ACCAGAAGAGCACCGAGCTGCTCATCCGCAAGCTGCCCTTCCAGCGCCTCGTGCGGGAGA
TCGCGCAGGACTTCAAGACCGACCTCCGCTTCCAGAGCTCCGCCGTCTCCGCCCTCCAGG
AGGCCGCCGAGGCGTACCTGGTGGGGCTCTTCGAGGACACCAACCTCTGCGCCATCCACG
CCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTCGCAAGACGCATCAGAGGAGAGA
GGGCCTAGGCTTCCTAGTTTCTGTTTCATCTGCAGGTGTAAAGATTAGCATGTGTTGCGT
GGTGGAGTGATCTGATGTCGTGGTAGGAAGATCCCTTGCTCTTGCTACGGTGTGATGTTC
TAGTGCAGTGCTTGATGTTACCATCTTGTTGTCATCAGCAATCTGAATGGAAGTTGGCTA
TCAAAAAAAAAAAAAAAAA

Homology of Contig U35_14053 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g05730.1	137	9e-89	protein\|histone H3, putative, expressed
Brachypodium v1_2	Bradi4g07840.1	137	1e-89
Arabidopsis v10	AT5G65360.1	136	4e-89	Histone superfamily protein \| chr5:26120099-26120509 REVERSE LENGTH=136