- Probe CUST_16406_PI390587928
- Source Contig U35_22204
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_16406_PI390587928 | Hv_44K_v2 | TTGTGATCTGATCTTGATCTGTATCTTCTCCCATGATGAAAATGCATGATGCAATTCTCG | 668 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.214 | 1.285 | 1.505 | 1.045 | 0.291 | 0.300 |
| Raw | 1010.373 | 1811.541 | 1771.517 | 2002.045 | 187.083 | 210.833 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_56096.2 | 6725 | 3e-22 | 6567 - 6625 | 98 | 59 / 60 | plus | ABC07979 ABC16427 |
| MLOC | MLOC_56096.3 | 4453 | 3e-22 | 4388 - 4446 | 98 | 59 / 60 | plus | ABC07979 ABC16427 |
| MLOC | MLOC_56096.1 | 4567 | 3e-22 | 4498 - 4556 | 98 | 59 / 60 | plus | ABC07979 ABC16427 |
| JLOC1 | JLOC1_36260.1 | 4411 | 1e-22 | 4323 - 4381 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC16427 | 749 | 3e-25 | 22 - 81 | 100 | 60 / 60 | minus | ABC16427 |
| Harvest35 | U35_22204 | 749 | 3e-25 | 669 - 728 | 100 | 60 / 60 | plus |
Contig Sequence (749 bp)
>U35_22204 749 Hv_44K_v2 CGGCAAGGACATCAGGAGGCTGAACCTCAAGTCCCTGCGTCGCAAGATCGGGCTGGTGCA GCAGGAGCCGGTCCTCTTCGCCTCCAGCATCCTGGAGAACATCGCGTACGGCAAGGAAGG CGCGACGGAGGAGGAGGTGATCGATGCGGCCAAGACGGCCAACGTGCACGCGTTCGTGAG CCAGCTTCCCGACGGGTACCGGACGGCGGTGGGCGAGCGGGGCGTGCAGCTGTCGGGCGG GCAGAAGCAGCGGATCGCCATCGCCAGGGCGGTGCTCAAGGACCCGGCCATCCTGCTGCT GGACGAGGCGACGAGCGCGCTGGACGCCGAGTCGGAGAGCGTGCTGCAGGAGGCGCTGGA GCGGCTGATGAAGGGGCGGACGACGGTGCTGGTGGCGCACCGGCTGTCGACGATCCGCGG CGTGGACCGCATCGCCGTGGTGCAGGACGGGCGCGTCGTGGAGCACGGCGGGCACTCGGA GCTCGTCGCGCGGCCCGAGGGGGCCTACTCGCGGCTGCTGCAGCTGCAGAACCCCCGCAA CTGATTGATACCATTTGATCTTGGTGATTTTTGTGGGTGGTGGTGGTCTGGTCTGGTCTA GTGGGGGTGTAGATACTAGGGCGACCGTGTGTTACTGGTCTTATTATCTTTGTGCTTGAA CTGCCCCCTTGTGATCTGATCTTGATCTGTATCTTCTCCCATGATGAAAATGCATGATGC AATTCTCGTTTTAAAAAAAAAAAAAAAAA
Homology of Contig U35_22204 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os04g38570.2 | 990 | 5e-88 | protein|multidrug resistance protein, putative, expressed |
| Brachypodium v1_2 | Bradi5g23600.1 | 1267 | 4e-98 | |
| Arabidopsis v10 | AT3G28860.1 | 1252 | 4e-85 | | Symbols: ATMDR1, ATMDR11, PGP19, MDR11, MDR1, ATPGP19, ABCB19, ATABCB19 | ATP binding cassette subfamily B19 | chr3:10870287-10877286 REVERSE LENGTH=1252 |