barSeed - Barley Seed Development Database

Probe CUST_16403_PI390587928

Source Contig U35_22208

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16403_PI390587928	Hv_44K_v2	ATTCTTTTGTCTGAACGGATAAGAATCTTCTGATTCTGCGAATGAAGTTTTGGCAGGCGC	495	GeneList: yellowgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.981	2.081	1.644	0.824	0.214	0.196
Raw	9301.250	30233.673	20493.200	16585.630	1456.429	1445.303

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361603	2341	2e-24	2282 - 2341	100	60 / 60	plus	ABC18403
MLOC	MLOC_43987.1	587	7e-23	71 - 130	98	59 / 60	minus	ABC18403
JLOC1	JLOC1_28468.1	2171	4e-23	1655 - 1714	98	59 / 60	minus
Harvest21	ABC18403	575	3e-25	496 - 555	100	60 / 60	plus	ABC18403
Harvest35	U35_22208	575	3e-25	496 - 555	100	60 / 60	plus

Contig Sequence (575 bp)

>U35_22208 575 Hv_44K_v2
GCGAGCGGCGCCACGCCACCAACGCCACGGCGGCGCTCGCCTCGGCGGTGATCGAGCCGT
TCGACATGCCGGGAATGGCGGTCACCAACAGCCTGACGCTGTCGGCGGAGAAGGGCCCGA
GCTCTCTGTTCAACGTCGTCCCCGGGCTTGACGGGCAGCCCGGGTCGGTGTCCCTCGAGC
TCGGGGCCAGGCCGGGGTGCTTCCTTGTCACCGCCGGCGCGAAGGCGAATGTTCAGGTCG
GCTGCGGCGGCGGCGGCACGGGGTTTTCCCGGCAGGCGGCGAGCTTCGCGCGGGCTGAGC
CGCTGCGGCGGTACCATCCGATCAGCTTCGCCGCAAAGGGGGCGCGGAGGAGCTTCCTCC
TGGAGCCATTGTTCACGCTGAGGGACGAGTTCTACACCGTCTACTTCAACCTCGGCACCT
GACAGATGAACTAGTCCAGTCTGGTGTGTCTACCGAATAATACAGTAGAAGGAAACTGAA
AAATTCAGTTGTTCCATTCTTTTGTCTGAACGGATAAGAATCTTCTGATTCTGCGAATGA
AGTTTTGGCAGGCGCAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_22208 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g36027.1	875	4e-51
Arabidopsis v10	None