barSeed - Barley Seed Development Database

Probe CUST_16400_PI390587928

Source Contig U35_10231

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16400_PI390587928	Hv_44K_v2	TGACACGAGAACAGATCACCTGTGTAACTATGTATATGTAAGATGTGAGCTTTCTTCTAA	1049	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53511.1	2761	2e-23	1752 - 1809	100	58 / 58	plus	ABC08732 ABC08733 ABC20722
JLOC1	JLOC1_34386.1	1946	1e-23	1752 - 1809	100	58 / 58	plus
Harvest21	ABC20722	1124	3e-25	1050 - 1109	100	60 / 60	plus	ABC20722
Harvest35	U35_10231	1124	3e-25	1050 - 1109	100	60 / 60	plus

Contig Sequence (1124 bp)

>U35_10231 1124 Hv_44K_v2
GACGAAGGTTGTGCTGGAGGCCATGGAGGAAATAGATACCAAGAGGATCGATCCAAGCCA
AGAGAAGAGGGAGATTGGGTGGCAGAAAGCGGCGAACTGGGCCACGCCGGAGCCATATCC
AGAAGTGGAGCCTTGCGCAAAGTCTGCACCTGGTGCAGAAAGTACTATAATTGATTCAGC
TGTTACTTTGAGCTGTGATTCATCTACCACACTTCATAGTGCCACTGCATGCATACCTCC
CCCACCAACAGGCCGGTCAGTATCGATGAGGGACATGGGTACTGAGATGACCCCAATTGC
AAGCCAAGAACCATCCCGGACAGGAACACCTGTGAGAGCAACAAGCCTGGATTGCTCTCG
GCCAACTACTCCACGAAGGACATTGGGTATCAATGCAGCTGGCGGTGTTATCAACCGTGG
TGAATGTAGCAATGCAGATTTAAGCGAAGAGGAGTTGCAAATGAAGACTAAGAGAGAGAT
AATGCTTCTTGGCACCCAACTAGGTAAAACCAGCATCGCGGCATGGGCAAGTAAGAAGGA
AGAGGAAAAGGACGCATCACTTTCTCTCAAGACAGTGTCATCAGACCAATCTGCACAAAA
TGCAACCGAAATACGTGCAGCTGCTTGGGAGGAGGCAGAGAAGGCCAAATACTTAGCAAG
GTTCAAACGAGAAGAGATCAAGATCCATGCATGGGAAGATCACCAGAAAGCCAAAATCGA
AGCAGAAATGAGAAAAATTGAGGTCGAGGTGGAGAGGATGCGAGCCCGTGCCCAGGACAA
GCTGATGAGCAAGCTCGCGTCCACAAGGCACACTGCAGACGAGCAGCGAGCTGCCGCAGA
GTCGAAGAGGGACCAGAGCGCCGCGAGGACTGCAGAGCAGGCAGAGCACATCAGGAGAAC
CGGCCGGATGCCGCCCTCGCTTGGCTGCTGGAACTGGTGCTCGTAGCCCCAGAAGAAGAA
AACAGCATGTGTTGTTCCTCTCAACTGGTGAAGGAAATGAATCTGGCATTGTAGAAACTT
CTTCTCTTTTGATTGGTTCAGTAGATATGTGACACGAGAACAGATCACCTGTGTAACTAT
GTATATGTAAGATGTGAGCTTTCTTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_10231 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g02500.1	511	1e-169	protein\|remorin family protein, putative, expressed
Brachypodium v1_2	Bradi3g01570.1	524	0.0
Arabidopsis v10	AT2G02170.1	486	6e-90	Remorin family protein \| chr2:556595-558610 REVERSE LENGTH=486