- Probe CUST_16397_PI390587928
- Source Contig U35_10235
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_16397_PI390587928 | Hv_44K_v2 | CGCCCTTGATAAATACGAACAGGGTGTTAAGAATTGTTTAGGTGTATAGAATATTTTTGC | 800 | GeneList: salmon MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.001 | 1.684 | 0.563 | 0.784 | 1.071 | 0.858 |
| Raw | 14.618 | 18.694 | 4.567 | 9.905 | 4.199 | 3.057 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK358376 | 781 | 2e-24 | 695 - 754 | 100 | 60 / 60 | plus | None |
| MLOC | AK356401 | 816 | 2e-24 | 675 - 734 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_34456.5 | 2732 | 2e-24 | 1669 - 1728 | 100 | 60 / 60 | minus | ABC41174 |
| MLOC | MLOC_34456.7 | 2499 | 2e-24 | 1482 - 1541 | 100 | 60 / 60 | minus | ABC41174 |
| MLOC | MLOC_34456.2 | 3231 | 2e-24 | 2663 - 2722 | 100 | 60 / 60 | minus | ABC41174 |
| MLOC | MLOC_34456.3 | 3898 | 2e-24 | 3330 - 3389 | 100 | 60 / 60 | minus | ABC41174 |
| MLOC | MLOC_34456.6 | 2014 | 2e-24 | 1456 - 1515 | 100 | 60 / 60 | minus | ABC41174 |
| MLOC | MLOC_34456.10 | 1961 | 2e-24 | 1443 - 1502 | 100 | 60 / 60 | minus | ABC41174 |
| MLOC | MLOC_34456.9 | 2039 | 2e-24 | 1443 - 1502 | 100 | 60 / 60 | minus | ABC41174 |
| JLOC1 | JLOC1_22219.3 | 2290 | 8e-25 | 475 - 534 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_22219.2 | 3973 | 8e-25 | 475 - 534 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_22218.2 | 1881 | 8e-25 | 1784 - 1843 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_22218.1 | 1862 | 8e-25 | 1765 - 1824 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_10235 | 935 | 3e-25 | 801 - 860 | 100 | 60 / 60 | plus |
Contig Sequence (935 bp)
>U35_10235 935 Hv_44K_v2 AATTGTGCAGAGGCCCACAAGGAAGCACATCCGGCGACGACCATGAGCAGCCCGACGCCC GCCATCCACTCGCTCAGCGCGCCGCCGCGGACGCAGGCGCCGGCAACGCCTCCTCTCCGG CGCGCTACCTCCGCGGCTTCCACCCTCCGGGATTCCCCACAGCCACCTCTAGCGCCCCTG AACACTCCCTCTCGCCGCGCCGCCCTCCTCGCACTCGTCCTGGCCGCCTCGCCGGCAAGA CCCGCCGCCGCCGCCTTCTCCTTCAGCTTCCGTACGGACACCACCATAAACTCTCTAACC GCCGGTCATGGCTAGCGTGCGCCCTCAGTCTTCTCTCCTCTGCTTGATTTTCTCGCTGGT GCATGCGCAGCTGGGCCGAAGGAGCTGCTGCGGGAGCAGAAGAGGAAGTCGGCGCGCTTC CTCCTCGCGCCCATCGCCGCCTCCCGCGATACCCTCGTCAAAGCCCAGGACCTTCTCGCT TCGGAGAATGCGTCTGCCGCGGACGCCGAGGAGGTGAGGGGGCGGCTCAGCGCGGCGGGG AGGGACTGCGTGCCGCGGGAGAGGAACTCGATAGTCGCCTTTCAGTCACGAACTGGCGTC GAGGTCTGCACATTCAGCTTGATTCTGAAGAATGCGGCGTCGCTGCTTGACGATAAGGAT CCTCTCAAGGTTGAAGCTGATACTAGCCTTGCAGAGCTAATACAATCATTCTCTGACCTG GGAACTGTCGTGGATAACAGTAACTTTGAGCTCAGTGATGATAGAAAGAAGATGAAGGAT GACCTGCTGAGCACTATCTCCGCCCTTGATAAATACGAACAGGGTGTTAAGAATTGTTTA GGTGTATAGAATATTTTTGCTAATTTTCATTAAGTTCATTCTCAAGCAACTCTTGAGGCT TAAAATCATTTCAGAATAATCAAAAAAAAAAAAAA
Homology of Contig U35_10235 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g56320.3 | 242 | 1e-71 | protein|expressed protein |
| Brachypodium v1_2 | Bradi1g07132.1 | 276 | 1e-83 | |
| Arabidopsis v10 | None |