- Probe CUST_16384_PI390587928
- Source Contig U35_39574
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_16384_PI390587928 | Hv_44K_v2 | AGTCAATATGTCGTCAATCCTAAAAACTATGCGGGCTGCGCCATCTTTTCGTTTCACGTC | 161 | GeneList: darkmagenta MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 5.879 | 3.800 | 0.767 | 0.411 | 0.942 | 0.839 |
| Raw | 43.948 | 37.589 | 6.085 | 4.025 | 3.121 | 3.336 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC35749 | 386 | 3e-25 | 162 - 221 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_39574 | 386 | 3e-25 | 162 - 221 | 100 | 60 / 60 | plus |
Contig Sequence (386 bp)
>U35_39574 386 Hv_44K_v2 GCTACGCTAGAGGTTCACCGTCTATACGTTCCAATCTTGGTCCATAATGGTTAACGATTC AATAAATTTGTGAAAACTAAACCCGCGCATCTCGCTCGTTCATAACTTAATTCCCCTCCG TTATTACTGAACTTGTCCGGACCCTTCTCTGATCGCGCGACAGTCAATATGTCGTCAATC CTAAAAACTATGCGGGCTGCGCCATCTTTTCGTTTCACGTCCGCGCAAGCACGCGCGACT TACAAACCAGGGGCATTCAAGAAGCAGTTTGGACGACAGGAACAAAGGTGGCAGAGTTCA GCTTCTTTCGAGAGCCCCCCACCTAACTGGTTTAAGAGGATGTGGGAGAGCCCTATTGGC GTCAAGACTGTTCATTTCTGGTCACC
Homology of Contig U35_39574 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |