barSeed - Barley Seed Development Database

Probe CUST_16383_PI390587928

Source Contig U35_39577

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16383_PI390587928	Hv_44K_v2	TAAGTTACGCGGAGATTCCCTAGAAGAAAAAGGTGTTCCATGGAAGGAAAATTTAGAAAA	1	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.610	3.955	1.234	0.666	0.410	0.582
Raw	58.581	98.414	28.699	26.311	3.520	7.729

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_39577	700	3e-25	2 - 61	100	60 / 60	minus

Contig Sequence (700 bp)

>U35_39577 700 Hv_44K_v2
TTTTTCTAAATTTTCCTTCCATGGAACACCTTTTTCTTCTAGGGAATCTCCGCGTAACTT
ACACATGGTACAAAACACATAATTGTCTTGATTACAACTTGAATAGCTATGCCCATGTTG
AGTAACATATCAATGGAAGTTTATTCAAACATAGGTGGTGCATACTGTTTGTTGATGTCG
TAGGGGTGATATAGTTCAGGTTCATAAAGTTTGTAGTTATAAATAGCGTTTCATGTACTC
GTCCATCCTGGTGTACTGAACCTCTGGGTAGAGTAGAGAAGCCTCTTCTTCCCCATCATG
TCCGATCTCAAAGTTTGTCAAGCAACCCTCATAGAAAATGTGATAGTAATGCCCTATCCC
CACCTGATTAGCAAGGTCTGTACCTTTCATTGACGCCAAGAATTCATCACTCGGAATGGG
AATTTTCTCAAGAACCTTTCCCGAGACCTTTTCCCATTTAGCAATCAACTCATTCTGACT
AAGGATGTTTTCCTGTGGCCGTAGGTATATTGTCTTGTTCAAGGCCAGTGGATCATCAAT
GCACTTGATTGTGTACGCTGCAATGTCATCTTCGTCCATGAATACCGCTTTGACGTTGCC
ATCTCCATAAACGTGAACTTTCTCCTTGGGTGGAAGAAAGGTACCCATTTGACACAAGTT
AGGAGCAAAGTAAGCAGCAAAGCAGTTAGCAGAAATGTAG

Homology of Contig U35_39577 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g16410.1	315	3e-82	protein\|isoflavone reductase, putative, expressed
Brachypodium v1_2	Bradi4g39260.1	308	2e-85
Arabidopsis v10	AT1G32100.1	317	2e-64	\| Symbols: ATPRR1, PRR1 \| pinoresinol reductase 1 \| chr1:11546472-11547953 REVERSE LENGTH=317