- Probe CUST_16380_PI390587928
- Source Contig U35_41890
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_16380_PI390587928 | Hv_44K_v2 | GCATCAGCCCTTGTGGTTTTTCATAATCACGAATGAGTTTCTGCAATTTTTCCCAAAAAA | 11 | GeneList: darkolivegreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.100 | 0.154 | 0.611 | 1.605 | 1.631 | 2.147 |
| Raw | 7.095 | 17.551 | 68.177 | 286.660 | 95.806 | 137.013 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC37172 | 487 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus | ABC37172 |
| Harvest35 | U35_41890 | 487 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_35183 | 510 | 2e-22 | 129 - 183 | 100 | 55 / 55 | plus |
Contig Sequence (487 bp)
>U35_41890 487 Hv_44K_v2 TTTTTTTTTTTTTTTTTGGGAAAAATTGCAGAAACTCATTCGTGATTATGAAAAACCACA AGGGCTGATGCGAAAACAGCCGAAGAGATAAGGTTCTCTTCCTTTTTCTCTCCCGTAGTT AGGCTTGGTCCATCCGTGATAACCGTCGCCGCCGGGAGACAGTCGCATCGTGCGTCGCTG GGCCCTAGGTTGAAGCCGCATTCACCCCGATCCGGAGGAAGCGCTTTCGTACCTCGCGTT GGAGGCCGAAGGTTGTCACCGCTGCGACCATGCCAGCGGCTGTTTTGCGGGAGGCCGCGT TGGGAAGCCGTCGAGGCTGGGGCCGTGCGCCGCCGCTGCCACGGGACGAGCCTCATGGCG CAGCGCAAGCGGCCTGGCGGACGGGCGCTGGGCACGGGCGGGCGCGGCGGCCGCGTTCTG CAGCGCGGTGGCCAGATCCTGGCGCTGGCGACCACAGCGTTGGCGGGCAAGTGCGAGCGC CGCCATG
Homology of Contig U35_41890 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |