barSeed - Barley Seed Development Database

Probe CUST_1636_PI390587928

Source Contig U35_14057

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1636_PI390587928	Hv_44K_v2	TTACATAACAATGATTACTTGCATGTGGTGGAGGTTGACTAGGAGGGATTCATGTTATTT	616	GeneList: orange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.134	0.974	1.863	1.747	0.944	0.614
Raw	3.149	61.355	95.510	142.870	27.396	19.594

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
Harvest21	ABC33674	650	3e-25	509 - 568	100	60 / 60	plus
Harvest21	ABC02230	679	3e-25	617 - 676	100	60 / 60	plus
Harvest35	U35_37909	650	3e-25	509 - 568	100	60 / 60	plus
Harvest35	U35_14057	679	3e-25	617 - 676	100	60 / 60	plus

Contig Sequence (679 bp)

>U35_14057 679 Hv_44K_v2
CTTGATTAGCCCGGCCCCGTCCCCGTCCCCATGGCGTCCAAGCGGATCCTCAAGGAGCTC
AAGGACCTGCAGAGGGACCCCCCCACCTCCTGCAGCGCCGGTCCTGTGGCAGAAGATATG
TTCCACTGGCAAGCGACGATCATGGGTCCATCTGAAAGCCCATATGCTGGTGGTGTATTT
TTGGTTACTATTCACTTTCCCCCGGACTACCCATTCAAGCCACCCAAGGTATGCAGTCGA
GTGTATGCAATGATCTGAAATTATTCCTAGGAGGATACAACAGTGCTTGCCTTTTCAACT
CTCTAGCTCCTTGAGATTCCCCGAAGCCCTGTTAAGAAACTTCCTTGCCAACGTCTTGCA
TTAATGCTCCTAAAAAAATTATTCAAGCTTAATTACTATAAATCTATCGGACAAACTGTG
TCAAGAGTCGGAGGAATGGTTCATCTATTAGCACGTCCCTTTTCTGTTTGTGTATTAATC
ACTGGACCTGTATACCAAACTCTTGTTCTTGGCATGTACAGCGGATGATTCTTGCATGAT
GCATGTTCTAGTAATATTATGGTGATTGAATTGTGCTTATTGAGAAAATGAGCTAGTATG
ATAATTGAGATGCATGTTACATAACAATGATTACTTGCATGTGGTGGAGGTTGACTAGGA
GGGATTCATGTTATTTTTT

Homology of Contig U35_14057 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None