- Probe CUST_16364_PI390587928
- Source Contig U35_39593
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_16364_PI390587928 | Hv_44K_v2 | TTCAGCCAAATTCTTACAATAAGCCAACGATATGGACTGAGGATTGGGATGGGGGGTATG | 33 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.256 | 1.034 | 1.139 | 0.745 | 0.992 | 1.054 |
| Raw | 31.829 | 34.366 | 39.722 | 33.381 | 18.913 | 22.613 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK252929.1 | 3034 | 3e-21 | 887 - 946 | 97 | 58 / 60 | plus | ABC12244 |
| MLOC | MLOC_2974.3 | 485 | 3e-21 | 74 - 133 | 97 | 58 / 60 | minus | None |
| MLOC | MLOC_2974.2 | 841 | 3e-21 | 78 - 137 | 97 | 58 / 60 | minus | None |
| MLOC | MLOC_2974.1 | 1575 | 3e-21 | 315 - 374 | 97 | 58 / 60 | minus | None |
| JLOC1 | JLOC1_1783.1 | 309 | 2e-21 | 247 - 306 | 97 | 58 / 60 | plus | |
| JLOC1 | JLOC1_1782.1 | 807 | 2e-21 | 415 - 474 | 97 | 58 / 60 | minus | |
| Harvest21 | ABC35774 | 147 | 3e-25 | 34 - 93 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_39593 | 147 | 3e-25 | 34 - 93 | 100 | 60 / 60 | plus |
Contig Sequence (147 bp)
>U35_39593 147 Hv_44K_v2 CACGAGGTTGCAATGCATGTTACTGCGATGGGTTTCAGCCAAATTCTTACAATAAGCCAA CGATATGGACTGAGGATTGGGATGGGGGGTATGCCGACTGGGGTGGACCATTACCTCATA GGCCTGCCGAAGACAGCGCTTTTGCTG
Homology of Contig U35_39593 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |