barSeed - Barley Seed Development Database

Probe CUST_1635_PI390587928

Source Contig U35_14058

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1635_PI390587928	Hv_44K_v2	TGATCTGTCGCTATGTGTCGTGGTGCTTGAATGAAATGACAATGGAAAAGTTCAGTTAAC	547	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.566	1.422	1.149	0.973	0.504	0.374
Raw	58936.533	83597.933	58438.667	76239.100	14085.333	11380.100

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65126.1	361	2e-23	165 - 222	100	58 / 58	plus	ABC00075 ABC00660
MLOC	MLOC_29895.1	818	2e-23	633 - 690	100	58 / 58	plus	ABC00014 ABC00040 ABC00041 ABC00075 ABC00082 ABC00094 ABC00102 ABC00105 ABC00106 ABC00124 ABC00130 ABC00135 ABC00141 ABC00176 ABC00186 ABC00196 ABC00201 ABC00204 ABC00338 ABC00349 ABC00484 ABC00570 ABC00657 ABC00660 ABC00669 ABC00672 ABC00676 ABC00684 ABC00701 ABC00787 ABC00971 ABC31599 ABC32138 ABC47839
MLOC	MLOC_29895.2	661	2e-23	507 - 564	100	58 / 58	plus	ABC00014 ABC00075 ABC00082 ABC00094 ABC00106 ABC00130 ABC00135 ABC00141 ABC00186 ABC00196 ABC00204 ABC00338 ABC00349 ABC00657 ABC00660 ABC00669 ABC00672 ABC00676 ABC00684 ABC00787 ABC00971
MLOC	MLOC_4595.1	645	2e-23	385 - 442	100	58 / 58	minus	ABC00075 ABC00135 ABC00660
MLOC	AK365118	798	7e-23	742 - 798	100	57 / 57	plus	ABC00014 ABC00040 ABC00041 ABC00075 ABC00082 ABC00094 ABC00102 ABC00105 ABC00106 ABC00124 ABC00130 ABC00135 ABC00141 ABC00176 ABC00186 ABC00196 ABC00201 ABC00204 ABC00338 ABC00349 ABC00484 ABC00570 ABC00657 ABC00660 ABC00669 ABC00672 ABC00676 ABC00684 ABC00701 ABC00787 ABC00971 ABC31599 ABC32138 ABC47839
JLOC1	JLOC1_42835.1	323	1e-23	169 - 226	100	58 / 58	plus
JLOC1	JLOC1_19842.1	803	1e-23	634 - 691	100	58 / 58	plus
JLOC1	JLOC1_2885.1	375	1e-23	115 - 172	100	58 / 58	minus
Harvest21	ABC00660	624	1e-24	548 - 606	100	59 / 59	plus	ABC00660
Harvest21	ABC00075	610	4e-24	538 - 595	100	58 / 58	plus	ABC00075
Harvest35	U35_14058	627	3e-25	548 - 607	100	60 / 60	plus
Harvest35	U35_14027	611	1e-24	538 - 596	100	59 / 59	plus

Contig Sequence (627 bp)

>U35_14058 627 Hv_44K_v2
GCCGCACCCGATCTCCCAAGAAGGCACCACCACCACCACCCGCGCCGATGGCCCGCACCA
AGCAGACGGCGCGCAAGTCCACCGGCGGCAAGGCGCCGAGGAAGCAGCTGGCGACCAAGG
CTGCGCGCAAGTCCGCCCCGGCCACCGGCGGCGTCAAGAAGCCCCACCGCTTCCGCCCCG
GAACCGTCGCCCTCCGGGAGATCCGCAAGTACCAGAAGAGCACGGAGCTGCTCATCCGCA
AGCTCCCCTTCCAGCGCCTCGTGCGGGAGATCGCCCAGGACTTCAAGACCGACCTCCGCT
TCCAGTCCTCCGCCGTCTCCGCGCTCCAGGAGGCCGCCGAGGCCTACCTCGTCGGGATGT
TCGAGGACACCAACCTCTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACA
TCCAGCTCGCCCGCCGCATCCGTGGCGAGCGCGCCTAGGTTTCGGGTCGCCGGTAATACC
TAGCAGTAGCTGTTCTTGCCCTGTGATCCGGATGTGTGTCCGATGCTTCTGTTTGTTGGT
GTTGATATGATCTGTCGCTATGTGTCGTGGTGCTTGAATGAAATGACAATGGAAAAGTTC
AGTTAACAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_14058 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g05730.1	137	9e-89	protein\|histone H3, putative, expressed
Brachypodium v1_2	Bradi4g07840.1	137	1e-89
Arabidopsis v10	AT5G65360.1	136	5e-89	Histone superfamily protein \| chr5:26120099-26120509 REVERSE LENGTH=136