barSeed - Barley Seed Development Database

Probe CUST_16358_PI390587928

Source Contig U35_15600

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16358_PI390587928	Hv_44K_v2	GATGTTGCCAGTGTGGCTGTAAAACCATTGATCAAAGGTTTTGTTGCCTGTTGCAAAAAA	1416	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	9.193	6.974	2.297	0.545	0.115	0.080
Raw	2256.010	3006.859	789.906	313.026	21.636	17.229

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC04125	1529	8e-21	1347 - 1401	98	54 / 55	plus
Harvest21	ABC04124	753	8e-21	54 - 108	98	54 / 55	minus	ABC04124
Harvest35	U35_15600	1488	3e-25	1417 - 1476	100	60 / 60	plus
Harvest35	U35_38579	655	2e-22	96 - 150	100	55 / 55	minus
Harvest35	U35_15599	1418	8e-21	1236 - 1290	98	54 / 55	plus

Contig Sequence (1488 bp)

>U35_15600 1488 Hv_44K_v2
TCGAGCACTAGCATCGAGTCGGCCTTGTTGCCTCTGAGAGCCACACTGAGCCAAGAGAGC
TAGCAGTAGCAGAGAGTGAGAGTAGAGTGAGTGAGTGAGAATGGGTGGCAAAGCCGCCCT
CCTGGTGGCCCTCCTGGTCGTGAGCCTGGTCCTCGAGGCCCAGGCCGGCAGCGGCTACGG
CGGCGGGCACCCCCCTTCCCCGACGCCGATCACCCCACCCCCCAAGCACGAGAAGCCACC
CAAGGGGCACAAGCCCCCTCACCACCACCACCACGCCAAGCCACCGGTCGGCTCCCACGC
GCCGCCCACCTACAGCCCCCCGACGGCTAAGCCTACCCCTCCGGCCCCTAAACCTGCACC
ACCCACCTACGCCCCCATCCCGAAGCCGCCGAAGCCATCTCCTCCGGCGTACCACCCTAC
GCCCAAGCCTGCACCTCCCACGTACAAACCACCAACCCAGCCTAAGCCCTCGCCGCCGGC
GTACAAGCCAGCCCCCAAGGTCTCACCGCCTGCGTACAAGCCAGCCCCCAAGGTCTCACC
GCCGGCGTACAAGCCTGCTCCCAAGGTCTCACCGCCCGCGTACAAGCCAGCCCCCAAGGT
ATCGCCGCCAGCGTACAAGCCTTCCCCCAAGGTCTCGCCGCCGGCGTACAAGCCTGCCCC
CAAGGTCTCGCCGCCGGCGTACAAGCCAGCTCCCAAGGTCTCTCCGCCGGCTTACAAGCC
CGCCCCCAAGGTCTCACCGCCAGCTTACAAGCCCGTCCCCAAGCCCTCACCGCCGGCGCC
GAAGCCGACTCCACCGCCCTACAAGCCCCCGACGCCCACTCCTCCGGCGCAGAAGCCCCC
GACGCCCACTCCTCCGGCGTACAAGCCCCCGACGCCCACTCCTCCGGCGCACAAGCCCCC
GACGCCCACTCCTCCGGCGCACAAGCCCCCGACGCCCACTCCTCCGGCGCACAAGCCCCC
GACGCCTACTCCTCCGGCGCACAAGCCCCCGACACCTACTCCGGCATACAAGCCACCGAC
GCCTACTCCTCCGGCGGACAAGCCCCCGACGCCGACTCCTCCGGCGCACAAGCCCCCTAC
GCCTACTCCCCCGGCGCACAAGCCCCCGACGCCTACTCCTCCGGCGTACAAGCCCCCCAC
CCCGAGCCCCCCGCCTCCGCCGTACCACCACTAAGATCCACCACTCCGTCAAGCTGGGAG
CCGAGAAAAGCGGTCGAGAAGAGTTGTGCGAGCAGGCCAAGAAGAGCCACGTACGTACGG
CGTCGTTGATCCTCCTGCGGTGTGTGTTGCTGCCGAGCTAGCTAGGGCCGATCTCTCAGG
AGATGGAATAATGCAGATGGTACTCCCGCCATTAGTTATCTTACCAGCTTAAGTATTGTG
TTCGTCCAGTCTTAGCGTCTGTGTTGTTAGTGTCGCGATGTTGCCAGTGTGGCTGTAAAA
CCATTGATCAAAGGTTTTGTTGCCTGTTGCAAAAAAAAAAAAAAAAAA

Homology of Contig U35_15600 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None