barSeed - Barley Seed Development Database

Probe CUST_16353_PI390587928

Source Contig U35_15605

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16353_PI390587928	Hv_44K_v2	TGTTCGCGAAAACATCCCAGAAAATATCGAATATATCCCCATCGTCCCATTTATCCGCGT	99	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_25246.2	1578	2e-24	1451 - 1510	100	60 / 60	minus	ABC04975
MLOC	MLOC_25246.1	2622	2e-24	2322 - 2381	100	60 / 60	minus	ABC04975
JLOC1	JLOC1_17285.2	2608	8e-25	137 - 196	100	60 / 60	plus
JLOC1	JLOC1_17285.1	2509	8e-25	34 - 93	100	60 / 60	plus
Harvest35	U35_15605	579	3e-25	100 - 159	100	60 / 60	plus

Contig Sequence (579 bp)

>U35_15605 579 Hv_44K_v2
GCGAAATGCAATCTGAAGTGCAGAAGAGCAACTAGCACGGAACCCCGCCTAATCGCAAAC
AAGGACCCAAAATAGTATTTTCTCTAAACACCAACGCCTTGTTCGCGAAAACATCCCAGA
AAATATCGAATATATCCCCATCGTCCCATTTATCCGCGTCCATCTTTCTCCTCTTCCCCT
CGCGGCGGCGTCGTGGGTGGAACCCGCTCCAGGCATTCTTCCACCGAAGATCGGGACGAT
TTCTCTTTTTTCCGCGGCTAGATTTGGCGTCGGGAGAGGGAATTCGATCTGAAAATGGGG
CTGTTCCGGGCCGCGTCGGGTTTAGCCCGGGTGGCGCTGCGGAGGAGCCTGTCGCGCGCT
CCGGCGAGCCCGTTCGCCGGCCCCGCGCCGCGGTACTTCCACTCGACGCTCCCCCGGCGG
TACGCGGCGCCTGAGCCCCGCGCCGTGCCGCTCTCGCGCCTCACAGACAGCTTCCTCGAT
GGGACCAGCAGCGTGTACCTCGAGGAGCTGCAGCGGGCGTGGGAGGCGGACCCGACCTCC
GTCGACGAGTCCTGGGACAACTTCTTCCGGAACTTTGTC

Homology of Contig U35_15605 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None