barSeed - Barley Seed Development Database

Probe CUST_16349_PI390587928

Source Contig U35_15609

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16349_PI390587928	Hv_44K_v2	ACTCTTGAGCATCTATCACTGCTTTTCTAATTCACATTTCTGCTGTCAGGGTCGTATGGC	222	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14118.5	3207	2e-24	2393 - 2452	100	60 / 60	plus	ABC03873 ABC03875 ABC39567 ABC49783
MLOC	MLOC_14118.4	2587	2e-24	2247 - 2306	100	60 / 60	plus	ABC03873 ABC03875 ABC39567
MLOC	MLOC_14118.3	3040	2e-24	2182 - 2241	100	60 / 60	plus	ABC03873 ABC03875 ABC39567 ABC49783
MLOC	MLOC_14118.1	4599	2e-24	3741 - 3800	100	60 / 60	plus	ABC03873 ABC03875 ABC39567 ABC49783
Harvest21	ABC42952	313	3e-25	207 - 266	100	60 / 60	plus
Harvest35	U35_15609	554	3e-25	223 - 282	100	60 / 60	plus

Contig Sequence (554 bp)

>U35_15609 554 Hv_44K_v2
GTGGTTCCAACACACCATCAAGTAGTGATGTAGAGGCAGAACATGTTCCTGAGAACCAAG
ATCAAGCTAACGACAAGACACAGCAAGCATGTTGCAGTAATTCTTCAGCTGGTGACATGA
ACCATCGCAGGTTTAGGAACATTTCAAGCACGAATGATTCATGGAAGGAAGTTTCCGAGG
AGGTTGTAGTCTACCAGCATTGTCGAATTTCATTTCTATGTTACTCTTGAGCATCTATCA
CTGCTTTTCTAATTCACATTTCTGCTGTCAGGGTCGTATGGCTTTCGATAAACTGTTCAG
TAGAGGAAAGCTTCCCCAAAGCTTTTCTCCTCCACAAGCAGAAGGATTGAAGGTGGTTCC
CAGAGGGGAGCAAGATGAAGCTACTACGGTGACGGTCGACCTCAACAAGAGTGCTGCAGT
TATGGACCATGAACTTGACACATTGGTTGGGCCAAGAGCTTCCTTTCCCATTGAATTGTC
ACACCTGAATATGAAATCCCGCCGGACAGGCTTCAAACCTTACAAGAGGTGCTCGGTGGA
AGCAAAGGAGAATA

Homology of Contig U35_15609 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g06110.2	720	5e-59	protein\|MYB family transcription factor, putative, expressed
Brachypodium v1_2	Bradi3g16515.1	716	9e-62
Arabidopsis v10	None