barSeed - Barley Seed Development Database

Probe CUST_16348_PI390587928

Source Contig U35_15611

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16348_PI390587928	Hv_44K_v2	CGAAGGGAGAGCATGATCGCCTTGTGTTATTTTTATTTTCTTGAGAAAAATATTGTGCTA	3172	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.407	2.037	1.463	0.926	0.439	0.558
Raw	88.615	209.837	122.233	124.496	19.693	27.155

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14118.5	3207	2e-24	3091 - 3150	100	60 / 60	plus	ABC03873 ABC03875 ABC39567 ABC49783
MLOC	MLOC_14118.3	3040	2e-24	2880 - 2939	100	60 / 60	plus	ABC03873 ABC03875 ABC39567 ABC49783
MLOC	MLOC_14118.1	4599	2e-24	4439 - 4498	100	60 / 60	plus	ABC03873 ABC03875 ABC39567 ABC49783
JLOC1	JLOC1_9622.1	3823	8e-25	3677 - 3736	100	60 / 60	plus
Harvest35	U35_15611	3281	3e-25	3173 - 3232	100	60 / 60	plus

Contig Sequence (3281 bp)

>U35_15611 3281 Hv_44K_v2
AAAAAAAAAAGCACCCGAGTATCCGACATCTCGACCCTTCCCTTCCTTCGTCACTCGCGC
GCGCGCGCGCACGCACGCACGCACGCTTGTTCCTCCAGCTGCTGGCCTAGCTAGATCCCC
AAAGCTGAGGAGGTGGCCGGAAAGCTTCGTCCGGAAGCATCGGCCGGTGGCGGCAGAGAG
AGGTGCTCCTGCGCCCGGCGCGGCGGTCGCTTGAGGCCGCCGCGCGGAGGGCGGGCTGGG
CGGGCGACGTGGCCACCGGGGTCAGCTTGCTTGCTGCTCGCCCGAGTAACTTTCAGGTGT
AGGAAGTGTTAAGGGGATACATAATCGGTTTTGAGCTGCGAGGCCCTGCATTTCTTCTGC
CTGCTGTTTGATTCACGGCCCACTCTTTTCCTTCTATCCATTCAAGCAAAGTACTGGAAT
TTCTGAGCCCAATTTATTCAGGTCATGGGATTTGTTTGTCCTTAGCAGAGTTGAAGATAA
AGAGAGGAAGGCTAAACTCTGCTGATCCGGTTCATGCGAGCAATGAGCCAACTGCAGTAG
AGGTTTACAGTAGAGAGGTTTAGGGGGAGGTATGAGATACTACTCGCGTCAGGTCCAGCG
TTTGGCTGGAGACACAGAAGGAGGAGTGCTGTTGTTTGTAGACGCCCTCAACTCCAAGTA
ACAAAGCGACCAGTTGTCAGCACTTCCTTTTGTTTTCGCATTTCCCTGGAATTGGAGATG
GAGATAAATTCTTCGGGTGAGGAAACGGTGATAAAGGTGCGAAAGCCGTACACAATAACA
AAACAGCGGGAGCGGTGGACTGAGGCAGAGCACAAACGGTTCCTTGAAGCCCTCAAACTG
TATGGCAGAGCTTGGCAGCGCATAGAAGAGCATGTTGGGACAAAGACGGCCGTGCAAATC
AGAAGCCATGCTCAGAAGTTCTTCACAAAGTTGGAAAAGGAAGCTATCAACAATGGTACT
TCTCCAGGACAAGCTCATGATATAGACATACCTCCACCACGGCCTAAAAGAAAACCTAAC
TGTCCATATCCTCGAAAAGGTTGTCTCAGCTCTGAGACACCCACCAGAGAAGTTCCAAAA
TCAAGTGTTAGCTTGAGCAATAGCAATTCACAAATGGAAAGCAATGGAACTCTTCAGGTC
ACCAGCACTCAGAAACTTCAAAGGAAGGAGTTGTCTGGAAACGGCAGTTGCTCAGAAGTT
ATTAATATCTTTAGAGAAGCACCATCTGCCTCATTTTCTTCCTCTAACAAGAGCTCTTCA
AATCATGGTGTCTCTGGGGGAATTGAACCGACTAAAACAGAAATCAAAGATATGGCAGCC
ATGGAAAGGAAATCTACTTCCGTTGATGTGGCGAAGGATGTAAAAGATATTAATGACCAG
GAAATGGAAAGGAACAACAGAGTCCACATCAGTTCTAAATATGACCGTTCTCATGAAGAT
TGTTTGGATAGCTCAATGAAACACATGCAGTTGAAGCCAAATACTGTGGAGACAACATAC
ACGGGTCAACATGTTGCAAGTGCTCCACTCTACCAAATGAATAAGACTGGGGCAACTGGC
ACTCCAGACCCTGGAACTGAAGGAAGTCATCCTGATCAAACGAATGATCAAGTGGGAGGA
GCTAATGGAAGTATGGACTGCATCCATCCAACACTTCCCGTGGATCTAAAATTTGGCAGC
AGCTCCACAGCGCAGCCCTTTCCCCACAACTATTCAGGCTTTGCACCAACGATGCAATGC
CAGTGCAACCAAGATGCCTACAGGTCATCTGTTGATATGTCGTCCACCTTCTCCAACATG
CTCGTTTCCACATTGTTATCAAACCCCACAGTACATGCAGCTGCAAGGCTTGCAGCATCA
TACTGGCCAGCAGCAGACAGCAACATCCCTGTCGATCCAAATCAAGGAATTTTTGCTCAG
AATGCTCAAGGAAGACATATTGTTTCTCCTCCAAGCATGGCTTCTGTGGTAGCAGCTACA
GTTGCTGCGGCTTCGGCATGGTGGGCAACACAAGGTCTTCTCCCTCTTTTTGCTCCCCCC
ATGGCTTTTCCATTTGTCCCAGTTCCTACCGCTTCCTTTCCCACAGCGGATGTCCAGCGA
GCTACAGAGAACTGCCCAGTGGACAACGCACCAAAGGAATGCCAAGTAGCTCAGGGGCAA
GGTCAACCTGAAGCTATGATAGTTGTAGCATCTTCTGGGTCCGGCGAGAGTGGAAAAGGA
GAGGTGTGTCCTCACACTGAGTTAAATATATCTCTGGCTGATAAAGCTGAGACAACACCT
GCCACAGGAGCTGAAACAAGTGATGCTTTGGGCAACAAGAAGAAGCAGGATCGCTCTTCA
TGTGGTTCCAACACACCATCAAGTAGTGATGTAGAGGCAGAACATGTTCCTGAGAACCAA
GATCAAGCTAACGACAAGACACAGCAAGCATGTTGCAGTAATTCTTCAGCTGGTGACATG
AACCATCGCAGGTTTAGGAACATTTCAAGCACGAATGATTCATGGAAGGAAGTTTCCGAG
GAGGGTCGTATGGCTTTCGATAAACTGTTCAGTAGAGGAAAGCTTCCCCAAAGCTTTTCT
CCTCCACAAGCAGAAGGATTGAAGGTGGTTCCCAGAGGGGAGCAAGATGAAGCTACTACG
GTGACGGTCGACCTCAACAAGAGTGCTGCAGTTATGGACCATGAACTTGACACATTGGTT
GGGCCAAGAGCTTCCTTTCCCATTGAATTGTCACACCTGAATATGAAATCCCGCCGGACA
GGCTTCAAACCTTACAAGAGGTGCTCGGTGGAAGCAAAGGAGAATAGGGTGCCGGCTGCT
GACGAGGTTGGTACCAAAAGGATTCGCCTTGACAGCGAACCCTCCACGTGATTTACTTCC
CACGACATGATTACCAGCCTGCACAAGTAGTGTATTTTCAAGAAATTGCGGTATTTACAT
CTAAGCTACTATAGGACTTGCCAGTCCTTGCAATGCAGTGTTTCACAGAACTCAATTTGT
TATGTGTTGTATGTTAATGCTTGCCGAGCAGCCCTTTTAGACTGTCAATTAAGCATTAAG
CACCTATGCATGCTACTTTATTGGTAAAAAAGTAATTCTGCTTATTTTTCTGTGATGAAG
GAAAAAACTTGTAATTTTGCTTCATTTTACTGGATCATGTAGATTTAATTCCCGAAGGGA
GAGCATGATCGCCTTGTGTTATTTTTATTTTCTTGAGAAAAATATTGTGCTATGTATATG
CACCCTAGATTTGAAGTTTCTTGGAAAAAAAAAAAAAAAAA

Homology of Contig U35_15611 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g06110.2	720	0.0	protein\|MYB family transcription factor, putative, expressed
Brachypodium v1_2	Bradi3g16515.1	716	0.0
Arabidopsis v10	None