barSeed - Barley Seed Development Database

Probe CUST_1633_PI390587928

Source Contig U35_14059

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1633_PI390587928	Hv_44K_v2	GTACCATCTTGTTGTCATCAGCAATAGAAATGAAAATGTCGGCTTTCTGTTCTCAAAAAA	598	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_35020.1	343	3e-22	174 - 229	100	56 / 56	plus	ABC00669 ABC00672
JLOC1	JLOC1_22625.1	314	1e-22	174 - 229	100	56 / 56	plus
Harvest21	ABC00669	669	3e-25	599 - 658	100	60 / 60	plus	ABC00669
Harvest35	U35_14059	669	3e-25	599 - 658	100	60 / 60	plus

Contig Sequence (669 bp)

>U35_14059 669 Hv_44K_v2
GCCCTGACCTCCGACCTTCTCGTCCTCCCGCCGCACCGACGACATGGCCCGCACCAAGCA
GACGGCGAGGAAGTCCACCGGCGGCAAGGCGCCGAGGAAGCAGCTGGCCACCAAGGCCGC
CCGCAAGTCCGCCCCGGCCACCGGCGGCGTCAAGAAGCCCCACCGCTTCCGCCCGGGCAC
CGTCGCGCTCCGGGAGATCCGCAAGTACCAGAAGAGCACCGAGCTGCTCATCCGCAAGCT
CCCCTTCCAGCGCCTCGTCCGGGAGATCGCCCAGGACTTCAAGACCGACCTCCGCTTCCA
GTCCTCCGCCGTTTCCGCCCTGCAGGAGGCCGCCGAGGCATACCTCGTCGGGCTCTTCGA
GGACACCAACCTCTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCA
GCTCGCCCGCCGCATCCGTGGCGAGAGGGCCTAAGCTCCGTTCGCCGTCGTCGTCGTCGT
GTGTTAGTTAGATCCTTGTTAGGCTGTGTTCGTTGGTGGAAATGTGCGTGCTGGTAGTGT
TTCAGAACTGAACCTTAGTTGTTCTTCTCATGGTGGATGTGCTCTGTCTAATCTGATGGT
ACCATCTTGTTGTCATCAGCAATAGAAATGAAAATGTCGGCTTTCTGTTCTCAAAAAAAA
AAAAAAAAA

Homology of Contig U35_14059 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g05730.1	137	8e-89	protein\|histone H3, putative, expressed
Brachypodium v1_2	Bradi4g07840.1	137	1e-89
Arabidopsis v10	AT5G65360.1	136	4e-89	Histone superfamily protein \| chr5:26120099-26120509 REVERSE LENGTH=136