barSeed - Barley Seed Development Database

Probe CUST_16335_PI390587928

Source Contig U35_15624

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16335_PI390587928	Hv_44K_v2	GATCTTCATCTTTGTCAAGAACACTCTTCCACCAACAGCTGCCCTGATGTCTGCGATTTA	334	GeneList: lightyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.422	0.582	1.002	1.566	1.114	1.059
Raw	2323.810	5050.493	7621.307	18664.643	4639.213	4866.710

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74964.1	690	2e-24	339 - 398	100	60 / 60	plus	ABC00143
JLOC1	JLOC1_49978.1	705	8e-25	299 - 358	100	60 / 60	plus
Harvest21	ABC34409	691	3e-25	446 - 505	100	60 / 60	plus
Harvest21	ABC00849	677	3e-25	291 - 350	100	60 / 60	minus
Harvest21	ABC00143	680	3e-25	328 - 387	100	60 / 60	plus	ABC00143
Harvest35	U35_15624	688	3e-25	335 - 394	100	60 / 60	plus

Contig Sequence (688 bp)

>U35_15624 688 Hv_44K_v2
GCACGAGGCACCCCACGCCCTCCCGTCTCCCCGCCGCCTCCTCATCCGCGTCGCAAACCC
TCGTCCAATCCGCCGAATCCCGCGACCAAGGAACCCAAGGTAGATCGATGGCCAAGAGCT
CGTTCAAGCTGGAGCACCCGCTCGAGAGGAGGCAGGCGGAGGCTAACCGCATAAGAGAGA
AGTACTCTGACAGAATTCCTGTGATCGTTGAGAAGGCTGGGAAGAGTGATATTCCTGACA
TTGACAAGAAAAAGTACCTTGTCCCAGCTGATCTTACAGTTGGACAGTTTGTGTACGTGG
TTCGTAAGCGTATCAAGCTCAGCGCTGAGAAAGCGATCTTCATCTTTGTCAAGAACACTC
TTCCACCAACAGCTGCCCTGATGTCTGCGATTTACGAGGAGAACAAGGACGAGGACGGCT
TCCTCTACATGACCTACAGCGGGGAGAACACCTTTGGATCGCTCGAATCGCTCTAGGTGG
TGCCGCCACGATGACAATCACTCTGAATGTCTCCTGTAAATAAGGCGTGCCAATCAACTG
TGTATATATTCTGGTTTGCCTCGTCGTAGGATCTTTAAATTGTGCAACCAAGAAAAACCT
AGTATCCTGACTTGTCCTATTTGAATGTTCTGACTTATATATATCAAGTAATCGACTATG
AAATTCGGTAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_15624 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g09240.2	121	4e-74	protein\|autophagy-related protein, putative, expressed
Brachypodium v1_2	Bradi3g14980.1	120	2e-74
Arabidopsis v10	AT4G21980.2	137	4e-70	\| Symbols: APG8A, ATG8A \| Ubiquitin-like superfamily protein \| chr4:11655868-11656809 FORWARD LENGTH=137