barSeed - Barley Seed Development Database

Probe CUST_16333_PI390587928

Source Contig U35_15626

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16333_PI390587928	Hv_44K_v2	TGGAGGCTGTTTTCGTCTCTTTGTTTTTTGTTTTTTGTGTTGGTTAATACATGCACTAGC	1403	GeneList: brown MasterList: Wall_associated_proteins_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.907	4.380	1.135	0.804	0.246	0.443
Raw	933.102	2255.233	494.308	575.536	59.280	120.433

Probe Sequence's BLAST hits in Barley Unigene Datasets

This probe has no hits to the blast databases

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence

Contig Sequence (1654 bp)

>U35_15626 1654 Hv_44K_v2
CTGGTACCGGTCCGTCATTCCTCGAGCACTGTTGGCCTACTGACACAACACAGCCGATCG
CATACTCTGATCTGATCAGTCGCACCAAACCGAGCTATAGCATCAGCTCGTCGGAGTTCG
GACCGGTCGACTCGGAACTCGTCATCAATGGCCGCCGTCCAGGTCCACGCCGCAACCCAC
GCCATGCCCGTCGAGGAGGCTCCGGCGCCGGCGGTGGTGGAGGCTGTCGAGCCGGCCGTC
GTCGTTGTCGAGGATACTACCGTGGCGGTGGAGGTCGTCGAGCCGGCCGTCGTCGCGGTC
GAGGAGGCTACGGTGGCAGCAGTGGAGATTGTCGAGCCGGCCGTCGACACAGTCGAGGTG
GCAACGGCTGAGGCTGTCGAGCCGGCCGTTGTCGCTGCCGAGGAGGCCGTGAAGGAGGAA
GTTGCTGCGCCGGCCGTGACCGAGCTGGCGAAAGAGCCCGAGGCAGCTCCAGCGGAGACC
AAGGAGGCCGAGACAGAGGTTGTCCAGCCGGCCGCCGCCGCTGAGGAGGCCCCTGTCACG
CCGACAGTGACCGAGACCAAAGAGCCGGAAGCTGCCCCTGCCGAGGGAACAGAGACCGAA
GTGGTGGAGCGTGAGGCAGCACCGGCTGAGGCCGAGACCAAGGAACCAGAGAAAGAAGCT
GCTCCGGCCGAGACCGAGACCAAGGAACCAGAGCAAGAAGCTGCTCCGGCCGAGACCGAG
ACCAAAGAGGCAGAGCCAGCCGCTGCCGAGGCCGAGGCCAAAGAGCCGGTGGCAGAGGAG
ACACCGGCCAAGGAGGAGGCCGCTGTGGCAGTGCAGGAGGAAGCAGCAACTACGGAGGCA
CCTGTGGAGGCTGCCGTGGCAGCCGAAGCAGCCGTGGAAGAGACAGAAGCACCAGCTGCT
GCTGCCGACGTCGAGGCCAAAGCGCCGGTGGCGGAGGCACCGGTCCAGGAGGAGGCAGCG
CCCGCAGCCACCGCCGCCGAAGCGTCTTCCGTGCAGGAGGAGGCGGCACCGGCCGAGGCA
CCCGTGGATGCACCCGCTGCCGCCGAGGCGGTGCCGGCAGAGGCACCAGCTGCTCAGGCT
GCCGCCGCCGCCGACAAGGCCGCCGAGTGAGTTGATGCGCGCGGGTGCGATCGTGCTCCT
GAGCTAGCCTTTGCCTGGCTTCGCCGTGCGCGTGCCGTGGCATTGCCATGGCACGGTACC
TTAGTTCGTTTATTATTGGATCCGTATGTGTGGGCGTATTTCGTGAGTGGTTGATCGTCG
TCGCGTGGGTGCGCAATGTACGTCACGTAGCTGCGTACATGGTCTAGCTAGCAGTCGTAT
GTGTGTCGTTCTCAGTTGGCTTCAATAATGTGTCAGTGGCGTTCCGGGTCCCACTGTCAG
TGATGTCATGGGGTCACTGGCTTTGGAGGCTGTTTTCGTCTCTTTGTTTTTTGTTTTTTG
TGTTGGTTAATACATGCACTAGCTATTTATTTGTAAAAAAAAAAAAAAAAAACTCCATCC
GTAAAAGATTTTTGAGTTTTTTTTCAAAAAAAAAAAAAACCGTAAAGAAATACAGTATAT
GAGTGTTTAGATCCCTAAAGTAGTAATCTAAATGATTTTATATTTTTTAGAAAGGAATAC
TAAAAAGGCTTGTGATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_15626 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None