barSeed - Barley Seed Development Database

Probe CUST_16332_PI390587928

Source Contig U35_15627

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16332_PI390587928	Hv_44K_v2	GTGCTGTATCTAGTTTGGTGGTTCATCATATTTTGATGCTCATGCATGAAGTAATTCATA	1044	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.427	1.405	1.124	0.793	0.321	0.267
Raw	11714.667	17903.853	12641.643	13883.733	1971.643	1818.300

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66305.2	1181	2e-24	1104 - 1163	100	60 / 60	plus	ABC04530
MLOC	MLOC_66305.1	3253	2e-24	177 - 236	100	60 / 60	minus	ABC04530 ABC37952
JLOC1	JLOC1_43675.1	1339	8e-25	1173 - 1232	100	60 / 60	plus
Harvest21	ABC04530	1146	3e-25	1033 - 1092	100	60 / 60	plus	ABC04530
Harvest35	U35_15627	1174	3e-25	1045 - 1104	100	60 / 60	plus

Contig Sequence (1174 bp)

>U35_15627 1174 Hv_44K_v2
GAGAGAGAGAAAAACGCGAAACCCCAAATCGATGGCCGCCGCCGCCCTCCTCCGCCGCTC
GCCGGCGGCGCGCGCCCTCCTTTCGCCGGCCCTCTCCTCCCGCCTCGTCGCCTCCAAGCC
CCATTCCTCTTCCCCCGCGCCGCCGCCGCCCTCATCGAAGCCTGCTAGCACCAAGACCTT
CTCGATCTACCGCTGGGACCCGGATTCCCCGTCGACGAAGCCCCACCTCAAGGACTACAA
GGTGGACCTCTCCGACTGCGGCCCCATGGTGCTCGACGCGCTCCTCAAGATCAAGAACGA
GCAGGACCCGTCCCTCACCTTCCGCCGGAGCTGCCGCGAGGGCATCTGCGGCAGCTGCGC
CATGAACATCGACGGCGACAACGGGCTGGCCTGCCTCACCAAGATCTCCTCGGAGGCGGC
CGGTGCCTCCACGATCTCGCCGCTCCCGCACATGTTCGTCGTCAAGGACCTCGTCGTCGA
CATGACCAACTTCTACAACCAGTACAAGAGCGTCGAGCCGTGGCTCAAGCGCAAGGACCC
GGCGTCGGCCGGAGGGAAGGAGATCTACCAGTCCAAGGCCGACCGCGCCAAGCTCGATGG
CATGTACGAGTGCATCCTCTGCGCCTGCTGCTCCACATCCTGCCCGTCCTACTGGTGGAA
CCCAGAAGAGTATCTCGGCCCCGCAGCGCTGCTCCATGCCAACAGGTGGATCCAAGACAG
CCGTGATGAGTTCACAAAGGAGCGCCTTGACTCCATCAACGACGAGTTCAAGCTGTACCG
CTGCCACACCATCAAGAACTGCACGCATGCCTGCCCCAAGGGGCTGAACCCTGCAAAGCA
GATCGACACAATAAAGAAGCTGCAGCTCGGAGCCTGAGTGTGAGCAGAGCAGGGTCTTCC
CCCGTGGAGATGTCGGAAAGTTGTAATCAGCCTGCCATTTGGTTTGTTTTTGCTCCATGG
TTTCTACCCTGACGAATAATGGATGGAAACGCCTGGCGATTCCGTGTAGGGAGTGAATAA
TTGCTACCAGATTTTGTTCTTTCCGTGCTGTATCTAGTTTGGTGGTTCATCATATTTTGA
TGCTCATGCATGAAGTAATTCATAAACTTATTAATTATTATCAACGTAAAAAAAAAAAAA
AAAAGTTTGGATGGTGTGTCTATTTTAGAAAAAA

Homology of Contig U35_15627 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g02640.2	282	9e-164	protein\|succinate dehydrogenase iron-sulfur subunit 2,mitochondrial precursor, putative, expressed
Brachypodium v1_2	Bradi3g13980.2	281	4e-171
Arabidopsis v10	AT5G40650.1	280	7e-143	\| Symbols: SDH2-2 \| succinate dehydrogenase 2-2 \| chr5:16281462-16283296 FORWARD LENGTH=280