barSeed - Barley Seed Development Database

Probe CUST_16320_PI390587928

Source Contig U35_15630

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16320_PI390587928	Hv_44K_v2	AATGGAGTGATCGGAGTCAGATACAAACAAGACTGGATAAATAAAACTAGTGGTTGATGC	1109	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.672	5.228	1.356	0.796	0.280	0.371
Raw	1505.353	2740.797	613.464	600.305	66.191	99.714

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66260.1	1140	7e-23	5 - 64	98	59 / 60	minus	ABC05181
JLOC1	JLOC1_43645.1	1465	4e-23	1088 - 1147	98	59 / 60	plus
Harvest21	ABC05181	1103	3e-25	1027 - 1086	100	60 / 60	plus	ABC05181
Harvest35	U35_15630	1186	3e-25	1110 - 1169	100	60 / 60	plus

Contig Sequence (1186 bp)

>U35_15630 1186 Hv_44K_v2
CCAACCCCCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGAAAGCCATAGCATCA
ATAAAACCTGGAAAGAGGAAAGCTAGACAGCTCAATTTCTCCTTCCTCTCCGCCCATACA
TATCTCTCTCTCCATCGATCTGACCTACATACACACAGAGAAAGTTAGAGAAGCAGCAGT
CGTACATGTAACCTAGCCTGGAGTTCTCCAAGCCAACGCTTCTTCTTCTTCTTCTTGGCT
GCCGCCTGGCGAACCTCGCCGTAGTCTGAACGGCCAGGGAGGGGGGCAGCGAGGCGGCGG
CGCCAGGGGATAATCAGAAGGAATGTCGTCGTCGGGCCAGATCGCACCGGCAGAACAAGT
CTGCTACGTCCACTGCAACTTCTGCAACACCGTACTCGCGGTGAGTGTCCCTGGGAACAG
CATGTTCAACGTCGTGACGGTCCGGTGTGGGCACTGCACGAACCTGCTTTCGGTGAGCCT
GAGAGGGCAGGTGCACTCGCCGCTCCCTGCTGCTGCACAGGCCCAGGAGAGCAGCCTGGG
CAAGCCCAGTGGCATCAACGGCTTCATTCGTGACCACAGCGTCTACAATCACCCGGAGTT
TGGTTCCTCTTCCACGTCGTCCTCCAAATTCCAGCTGCCCACGATGATGTTCTCCTCGCA
AAACGATCTGCTGCATGAACAGACGCTACACGCACGCCCTCCGGAGAAGAGGCAGCGTGT
TCCTTCTGCGTACAACAGATTCATCAAGGAAGAGATACGAAGGATCAAAGCAAACAACCC
CGACATTAGCCACAGGGAAGCCTTCAGCACTGCCGCAAAGAACTGGGCACATTACCCAAA
CATCCACTTCGGGCTAAACCCCGGGAGCGACGGTGGCAAGAGGCTCGCCGTCGACGATGC
CGCGCCGGCTGCCAAGAAGATCCAAGGTTTCTGTTCATAGACACGACGGGGTCGGGGTTC
CAAACAAGAAAAAATGTATCTATATATAGTATTAGTGTATCGCATATATATGTATATGTA
TACGTACGTACTGCATGTGAGTAACTAAAGAAGCAACAGAAAAAAGAAGAAGTCGCTACG
TACCTTTTACCTTGTTTATTAACTACGGCAATGGAGTGATCGGAGTCAGATACAAACAAG
ACTGGATAAATAAAACTAGTGGTTGATGCAAAAAAAAAAAAAAAAG

Homology of Contig U35_15630 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g42610.1	208	5e-86	protein\|YABBY domain containing protein, putative, expressed
Brachypodium v1_2	Bradi4g01300.3	187	1e-88
Arabidopsis v10	AT2G26580.1	164	4e-51	\| Symbols: YAB5 \| plant-specific transcription factor YABBY family protein \| chr2:11303923-11306739 REVERSE LENGTH=164