barSeed - Barley Seed Development Database

Probe CUST_16312_PI390587928

Source Contig U35_15638

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16312_PI390587928	Hv_44K_v2	ATACCTTGGACGGTTTGAATGGTTTTGATGGCACGGATACACATTACTTTCATGGCGGCT	1354	GeneList: lightcyan1 MasterList: Starch_synthesis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.079	0.216	0.973	1.387	1.114	1.287
Raw	40.424	139.360	665.817	1355.018	417.906	527.823

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71953.1	754	2e-24	550 - 609	100	60 / 60	minus	ABC03761 ABC26656
JLOC1	JLOC1_47850.1	667	8e-25	20 - 79	100	60 / 60	plus
Harvest21	ABC26656	2779	3e-25	1250 - 1309	100	60 / 60	plus	ABC26656
Harvest21	ABC03762	1431	3e-25	1355 - 1414	100	60 / 60	plus	ABC03762
Harvest35	U35_28038	2779	3e-25	1250 - 1309	100	60 / 60	plus
Harvest35	U35_15638	1431	3e-25	1355 - 1414	100	60 / 60	plus

Contig Sequence (1431 bp)

>U35_15638 1431 Hv_44K_v2
AGCACACCCCCCTGCGCCTCCTCATTTCGCTCGCGTGGGTTTAAGCAGGAGACGAGGCGG
GGTCAGTTGGGCGGTTGGGTTGGATCCGATCCGGCTGCGGCGGCAGCGACGAGATGGCGG
CGCCGGCGTTCGCAGTTTCCGCGGCGGGGATCGCCCGGCCATCGGCTCGTCGATCCAGCG
GGGCAGAGCCGAGATCGCTGCTCTTCGGCCGCAACAAGGGCACCCGTTTCCCCCTGCCGT
CGGCGTCGGAGGTTCTGGGTGGCGCGTGGTCATGCGCGCGGGCGGCCCGTCCGGGGAGGT
GATGATCCCTGACGGCGGTAGTGGCGGAAGCGGAACACCGCCTTCCATCGAGGGTTCCGT
TCAGTTCGAGTCTGATGATCTGGAGTTCCATTCATCGACGATGAACCAAGCCTGCACGAT
GGAGGTGAAGATACTATTCGGTCTTCAGAGACATATCAGGTTACTGAAGAAATTGATGCT
GAAGGCGTGAGCAGAATGGACAAAGAATCATCCACGGTGAAGAAAATACGCATTGTGCCA
CAACCCGGAAATGGACAGCAAATATACGACATTGACCCAATGCTCCGAGACTTTAAGTAC
CATCTTGAGTATCGATACAGCCTATATAGGAGAATACGTTCAGACATTGATGAATACGAT
GGAGGCATGGATGTATTTTCCCGCGGCTACGAGAAGTTTGGATTTGTTCGCAGCGCTGAA
GGTATCACTTACCGAGAATGGGCTCCTGGAGCAGATTCTGCAGCATTAGTTGGCGACTTC
AACAATTGGGATCCAACTGCAGACCATATGAGCAAAAATGACTTGGGTATTTGGGAGATT
TTTCTGCCAAACAATGCAGATGGTTCGCCGCCAATTCCTCATGGCTCACGGGTGAAGGTG
CGGATGGATACTCCATCTGGGACAAAGGATTCAATTCCTGCTTGGATCAAGTACTCCGTG
CAGACTCCAGGAGATATACCATACAATGGAATATATTATGACCCTCCTGAAGAGGAGAAG
TATGTATTCAAGCATCCTCAACCTAAACGACCAAAATCATTGCGGATATATGAAACACAT
GTTGGCATGAGTAGCCCGGAACCAAAGATCAACACATATGCAAACTTCAGAGATGAGGTG
CTTCCAAGAATTAAAAGACTTGGATACAATGCAGTTCAAATAATGGCAATCCAAGAGCAT
TCATACTATGGAAGCTTTGGGTACCATGTTACCAATTTCTTTGCACCAAGTAGCCGTTTT
GGGTCCCCAGAAGATTTAAAATCCTTGATTGATAGAGCTCACGAGCTTGGTTTGCTTGTC
CTGATGGATGTTGTTCACAGTCACGCATCAAGTAATACCTTGGACGGTTTGAATGGTTTT
GATGGCACGGATACACATTACTTTCATGGCGGCTCACGGGGCCATCACTGG

Homology of Contig U35_15638 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g32660.2	638	protein\|1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi3g44760.1	836
Arabidopsis v10	AT5G03650.1	805	\| Symbols: SBE2.2 \| starch branching enzyme 2.2 \| chr5:931924-937470 FORWARD LENGTH=805