barSeed - Barley Seed Development Database

Probe CUST_16311_PI390587928

Source Contig U35_15639

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16311_PI390587928	Hv_44K_v2	ATAAATCGTATGGTCAATACAACCAGGGCGTTGTGAGGAAAACATGCTCATCTGTGTTAC	549	GeneList: saddlebrown MasterList: Starch_synthesis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.179	0.513	0.936	1.204	1.034	1.403
Raw	1216.805	4954.863	8579.780	15985.487	5146.740	7500.797

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54228.1	1146	2e-24	1001 - 1060	100	60 / 60	plus	ABC03761 ABC26656
Harvest21	ABC03764	635	1e-23	550 - 610	98	60 / 61	plus
Harvest35	U35_15639	612	3e-25	550 - 609	100	60 / 60	plus

Contig Sequence (612 bp)

>U35_15639 612 Hv_44K_v2
AGGCCTGAATGGATAGACTTTCCAAGAGGCCCACAAGTACTTCCAACTGGTAAGTTCATC
CCAGGAAATAACAACAGTTACGACAAATGCCGTCGAAGATTTGACCTGGGTGATGCAGAA
TTTCTCAGGTATCATGGTATGCAGCAATTTGATCAGGCAATGCAGCATCTTGAGGAAAAA
TATGGCTTTATGACATCAGACCACCAGTACGTATCTCGGAAACACGAGGAAGATAAGGTG
ATCGTGTTTGAAAAAGGGGACTTGGTATTTGTGTTCAACTTCCACTGGAGTAATAGCTAT
TTCGACTACCGGGTCGGTTGCTTAAAGCCTGGGAAGTACAAGGTGGTGTTAGACTCAGAC
GCTGGACTCTTTGGTGGATTTGGTAGGATCCATCACACTGGAGAGCACTTCACTAATGGC
TGCCAACATGACAACAGGCCCCATTCGTTCTCAGTGTACACTCCTAGCAGAACCTGTGTT
GTCTATGCTCCAATGAACTAACAGCAAAGTGCAGCATGCGCATGCGCGCTGTTGTTGCTT
AGTAGCAACATAAATCGTATGGTCAATACAACCAGGGCGTTGTGAGGAAAACATGCTCAT
CTGTGTTACCAT

Homology of Contig U35_15639 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g32660.1	826	5e-105	protein\|1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi3g44760.1	836	2e-110
Arabidopsis v10	AT5G03650.1	805	3e-80	\| Symbols: SBE2.2 \| starch branching enzyme 2.2 \| chr5:931924-937470 FORWARD LENGTH=805