barSeed - Barley Seed Development Database

Probe CUST_16303_PI390587928

Source Contig U35_27613

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16303_PI390587928	Hv_44K_v2	ACTTAATTCTTTGCCTGGCGTTACAGATCAGGGCGATAGGGCTACAGAGAGGCGAGGCCC	300	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK353713	2492	2e-24	169 - 228	100	60 / 60	plus	ABC16722
MLOC	AK354295	2550	2e-24	277 - 336	100	60 / 60	plus	ABC16722
MLOC	MLOC_70152.1	3096	2e-24	2268 - 2327	100	60 / 60	minus	None
JLOC1	JLOC1_46541.1	2272	8e-25	339 - 398	100	60 / 60	plus
Harvest21	ABC23862	518	3e-25	301 - 360	100	60 / 60	plus
Harvest35	U35_27613	519	3e-25	301 - 360	100	60 / 60	plus

Contig Sequence (519 bp)

>U35_27613 519 Hv_44K_v2
CGATAGCGAGGGAGAGTTTCCCAATGTTCGTCGCTCTCGCCCCCTCCCTCGTCCTGACCT
TTCAATCTCACACCTCTGCCCCACCCCCAACCCCCTTTCTCTAGATGTCAATACTTTCCC
TCGTTCCTAGGCCGAGTCTAGCCGAGAGGAGACACGAGGAGGAGTAAAAACAAGAGAGCA
GACAGAGCCCGATAGATAGGCAAGGAGAAGAGAACCCCAAGATTGGGATTGGAGGGCAAC
TGGTGCTCAAGCAAGGGATCCTTCCATCGATTCTTGCTTGCTTTTCGCCCCTTCCGTTGC
ACTTAATTCTTTGCCTGGCGTTACAGATCAGGGCGATAGGGCTACAGAGAGGCGAGGCCC
GGTCCCCGGATTCGCAGGAGTTGCGTCGGTGGTCGCGGCGCGATGGCTGGCGTTGACGCG
GCGAGGTACGCGCAGAGCCCAGCGCACCACGCCGTGGCGATGCAGGACCACGCTGCCCTG
CGCCGCGTGCTGGATGCGCTCCCGCAGGCTCGGAAGCCC

Homology of Contig U35_27613 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None