barSeed - Barley Seed Development Database

Probe CUST_162_PI390587928

Source Contig U35_33887

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_162_PI390587928	Hv_44K_v2	GATTGTGTCTCTTTTGACACAACCTACTTGACCAATATATACAAGATGCCTTGTGCCCCG	302	GeneList: plum1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.174	0.151	0.687	1.175	1.431	1.746
Raw	2.817	3.719	30.407	73.707	31.858	42.492

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76374.2	785	2e-24	708 - 767	100	60 / 60	plus	None
MLOC	MLOC_1588.1	1272	2e-24	238 - 297	100	60 / 60	minus	ABC23260
Harvest35	U35_33887	694	3e-25	303 - 362	100	60 / 60	plus
Harvest35	U35_9698	1525	1e-23	538 - 597	98	59 / 60	plus

Contig Sequence (694 bp)

>U35_33887 694 Hv_44K_v2
GCTCGAGGGCCGCCTTGTTCGGAAGTTGCTTCACTCGGCAATCTGGAACCTTCTAGACAC
AGCAGTGTGACAGAGTGCAGGCCAACGGAAGCAATGGTTACACTCATAAGACTGGCAAAC
TTTCGGCAAAGTTTCGGGCCCAGCATAAATACACTGATATGCAAGACACTATTGAGTACT
TCAAGAGCAGTCAACAACTTGATAAAGACTTTTTTTACAAGTACAAGCTTGATGATGATG
ATAAGGCCCAATGCATTTACTGGACTGATGGTTCAGCGAGAAGGGCATACAAGTTTTTCA
GTGATTGTGTCTCTTTTGACACAACCTACTTGACCAATATATACAAGATGCCTTGTGCCC
CGAGCGGCCGCTCACTATATGGCACCACACAACAGATATGCTGCTGTCAGCAGTGCTCTC
TGAATAGACACTGCAGTTATCATATACTGTACATCATTGCTGCTGCAATAAACCACCAAG
AATTATTTAAAATCTAGCCTAGCGTCTTCTTTGTTATCGTCAACCGAGGGTTGAGGCAAA
GCTACAAAATCTGAACGAGAAACCGAGGGATTGTCCGAATCAACGACATCTTTGTTATCT
TCAGAGCTGTCAGAAGCAGCTGAGACGGCGTCGCCCGATTCCGAATGCGTTCTGTCCACA
TATGCTTCGGGTAAGGAGCTTCCGGCTGCGTCAG

Homology of Contig U35_33887 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None