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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_16299_PI390587928Hv_44K_v2GGAAGTGGCTCCGGCCTGTGCTATCATGTTTGACAAATATGGATGTGCATACAAAACTCA547GeneList: lightcyan
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.9741.2291.6871.5770.6450.552
Raw 406.036792.944957.3641413.136203.284189.182



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK35374831867e-231352 - 14119859 / 60plus None
MLOCMLOC_23800.217627e-231368 - 14279859 / 60plus None
MLOCMLOC_23800.114319e-221374 - 14319857 / 58plus None
JLOC1JLOC1_16413.120734e-231424 - 14839859 / 60plus
Harvest21ABC263778553e-25548 - 60710060 / 60plus
Harvest35U35_276168553e-25548 - 60710060 / 60plus



Contig Sequence (855 bp)

>U35_27616 855 Hv_44K_v2
CGTCAGCCCACCAGACGACCGCGGATCTCTAAAACTCATGCTGACGGACGACGGTGGACT
CGGAGTTATTGTACAATACTTTGGTACGGATCTCAAACTATGGAAAAGAGAGGTGAGTGA
CGGCACTGATGCACGATGGGTGCTGAGCCGGCTCATTGACCTGTGCGATTTGATCCCAGC
TAATCTAGGTTTTAGAGTGCACCTGGGCATCACTGAGGGAGCAAATATCATTTTTGTTAA
CTCAGACGCTGCTGGCGTCTTTACAATTGAGCTGCAATCAAAGAAAGTGGAGGAAGGCGT
GTGACAATTCTGGCTTGGGTCGTTTGGTTCCACTTGTCACCTTCTACACTCCTATGCCCC
GAAGCTACAACCATAATCTGCTCGTGTCGAAGCCTAGTGAGGAGGCAGGTGGTGAGGAGG
GGGAGAAAACAATAGATCAGACACAGCGGCTGGTCGGCAAGGGGTCCAATGCTATCAATG
AGGAGGACGTTGTCAACACCTTCAAATGCGTCAGCCACAACCACAATATCAGGGCTCCAG
GCTATGGGGAAGTGGCTCCGGCCTGTGCTATCATGTTTGACAAATATGGATGTGCATACA
AAACTCAAGAGGTGAATGATTCTTTGGTTTCTGTCCACAAGAGTGCACCAAATGAAGAAT
TGGTGAAGGGTGCAACCAGGGAAAATGATGTCGGGGACTCAAAGACCTCTGGTAGCAGTG
TTGAAGATGCTGCTCCATCTTCGGAGAAAGTGCTTTGCTGATGGTCAGTCCAGACGTTTC
ATCAGTCAAATCATTCAGCGCTTTCAGTAGGATATCTTTCGTCTCTGCAGCTGGGAAGTA
TGGTCGTTTTTCATG



Homology of Contig U35_27616 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None