barSeed - Barley Seed Development Database

Probe CUST_16297_PI390587928

Source Contig U35_27618

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16297_PI390587928	Hv_44K_v2	TTAGGGCCTGAAACAACCCGTAGCATGGCTAAATCTTATTGATACGTTACAAAAAAGAAA	454	GeneList: thistle1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.223	1.694	0.780	0.698	0.769	1.217
Raw	7622.157	5807.700	2531.910	3296.890	1337.486	2399.400

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_27618	517	3e-25	455 - 514	100	60 / 60	plus

Contig Sequence (517 bp)

>U35_27618 517 Hv_44K_v2
GAGGATTGGCTAATTCGAAATCGTCTGTACAATTTGTAAAATTCTTTCTTATTGTTGAAG
TCCAAAATTCAAGTCTCTTGGCTCTTTTCACGCTTTCTCACAAACGGATTAAAAAATAGA
TTTTTAATTTTGAAGTTTGGATAAACCATTGCTTCGTCTGGTGTCTACAATACATATGAC
TCATATAGTACTAATTTTCTTTTTACCAGATCGAAAAATTTTATGTTGAAAAGAAAAATT
TATAGATCCAATGTCACATTCCGTAAAAATTTATGATACATGTATAGGATGCACTCAATG
TGTACGAGCTTGTCCAACAGATGTATTAGAAATGATACCCTGGGATGGATGTAAAGCCAA
GCAAATTGCTTCCGCGCCGAGAACCGAAGATTGTGTGGGTTGTAAGAGATGTGAATCTGC
CTGCCCGACAGATTTTTTAAGTGTCCGCGTTTATTTAGGGCCTGAAACAACCCGTAGCAT
GGCTAAATCTTATTGATACGTTACAAAAAAGAAAAAA

Homology of Contig U35_27618 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g21406.1	82	5e-56	protein\|photosystem I iron-sulfur center, putative, expressed
Brachypodium v1_2	Bradi1g05756.1	82	3e-55
Arabidopsis v10	ATCG01060.1	81	1e-52	\| Symbols: PSAC \| iron-sulfur cluster binding;electron carriers;4 iron, 4 sulfur cluster binding \| chrC:117318-117563 REVERSE LENGTH=81