barSeed - Barley Seed Development Database

Probe CUST_16290_PI390587928

Source Contig U35_3584

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16290_PI390587928	Hv_44K_v2	CTTTTACCCAATGTCCCCATCTCTACTACTGGAATGCAATGTTCAGTTGCCTATTTCAAA	1771	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.041	1.859	1.229	0.563	0.256	0.230
Raw	62.015	88.588	51.445	37.111	5.209	4.387

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_3584	1845	3e-25	1772 - 1831	100	60 / 60	plus

Contig Sequence (1845 bp)

>U35_3584 1845 Hv_44K_v2
ACGTCAACGTTCGCTCGCTCTCCAACAACGACTCCGCACGACCATGGCGGCATCCATGCC
GGCCTCCCCCCTCCGCCCGCTCCTCCTTCTCCTCCTCGCCGCCCTCACCTGCCACGCGGC
GGACACGAGCTGGAGCGGGAGCCCCTTCCGCCACGGGCGCGGCCGCGGCCTCGGCGTCAA
CTACGGCAGGGTGGCGGACGACATCCCGACGCCGCGGCGGTCCGTGCAGCTGCTGCGCGC
GGCGGGGGCGGGCTCCGTCAAGATCTACGACGCCAACCCGGCGGTGCTCCGCGCGCTGGC
CGGCACGGGCATGGCGGTCTCCATCATGGTGCCCAACCAGGTCATCCCGGACCTTGCCGC
CTCCTACGCCGCCGCCGACCGCTGGGTCGCCGCCAACCTGCTCCCCTACCTCCCGCGCAC
GCGGGTCAAGTTCCTGCTCGTCGGCAACGAGGTGCTCTCCGACGGCTCCATCGCCGCCTC
CACCTGGCCCCGCATCGTGCCGGCCATGGAGAACCTCCACCGCAGCCTCCGCGCGCGCCG
CGTCAGCCGCGTCAAGCTCGGCACCACGCTCGCCATGGACGCGCTCGTCGCGGGCGCCTT
CCCGCGCCCGCCCTCCGCCGCGGCGTTCCGCCCCGACATCGCCGAGTCCGTCCTGCGCCC
GCTGCTCCGCTTCCTCGAGGGCACCAACTCCTACTACTTCGTCGACGCATACACCTACTT
CGTCTGGGCCGGCAGCAACGGCACCGTCCCGCTCGACTATGCGCTCCTCCAGCCCGCCAC
GCGCGCCCGCTACGTCGACCCCGGCACGGGCCTCACATACACAAACCTGCTCGACGAAAT
GCTCGACGCCGTGGGCGCCGCCATGTCCAAGCTCGGCCACGGGGGCGTCAGGATCGCCGT
CGCCGAGACCGGCTGGCCCAACGGCGGCGACTACGACCAGATCGGCGCCAACGTCCGCAA
CGCCGCCGTCTACAACAGGAACCTCGCGGCGCGGATGGCCAGGAACCCCGGCACGCCAGC
GCGGCCGGGCGCCAGGATGCCCGTGTTCGTCTTCTCCCTCTACAACGAGAACCTCAAGCC
AGGCCCGGGCACCGAGCGCCACTGGGGGCTCTACTACCCCAACGGCACGGCCGTGTACCG
GGTCGACCTCACCGGGCGGCGGCCGCTGTGGGCGTACCCGCCGCTGCCGGCGCCGGAGAA
CGACACGCCGTACAAGGGCCAGATATGGTGCGTGCTGGCCGCCCACGCCGGCAGGAAGCT
GAACGAGACGGCGGTGGGGGACGCGCTGACGTACGCGTGCGGGCAGGGGAACGGGACCTG
CGACGCCGTCCAGCCCGGCGGCGAGTGCTTCCAGCCCAACACCGGCGCGGCGCACGCCAG
CTACGCCTTCAACTCCTACTGGCAGCAGTTCAGGAAGACAGGTGCTACGTGCTACTTCAA
CAACCTCGCAGAGCAGACCATCAAGGACCCAAGCCACGGATCGTGCAAGTTCAGGAGTTC
ATTGGGCTGATTGATTCACACATTGAGGGAGGACACTGAGGGTGATGTATTATGATCCTA
CTGATGTTCTCAAACCTTGTGATGTAACAGTGACAGCTGACCGTCCGTTTGACCATTTTT
CGTTTTTCGTGGTGGTTAGGCAGGCCGTTGTCCTTTTTGTTGTATCAAAATCATCATTCA
TGCACGTCATCTGTTGACGGTTGAAATGATAGTCACTCTGATTTCATTGTTACTGGCTCC
TGTCTTGCTAATCATGTCGCTTGCACGAACCCTTTTACCCAATGTCCCCATCTCTACTAC
TGGAATGCAATGTTCAGTTGCCTATTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_3584 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g32550.2	478	0.0	protein\|glucan endo-1,3-beta-glucosidase precursor, putative, expressed
Brachypodium v1_2	Bradi4g34390.1	478	0.0
Arabidopsis v10	AT3G07320.1	460	2e-144	O-Glycosyl hydrolases family 17 protein \| chr3:2332324-2333925 REVERSE LENGTH=460