barSeed - Barley Seed Development Database

Probe CUST_16277_PI390587928

Source Contig U35_20600

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16277_PI390587928	Hv_44K_v2	ATGTTAAGCGGTTGTTATTCCGAAAGTACCTTTCTCACCTGACCTCATAGTCTCCTGGTG	610	GeneList: thistle1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	18.795	7.088	1.465	0.761	0.220	0.250
Raw	3788.477	2436.933	412.248	366.780	33.578	44.566

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_8342.1	939	2e-24	260 - 319	100	60 / 60	minus	ABC12775
MLOC	AK371641	722	7e-23	631 - 687	100	57 / 57	plus	ABC12775
JLOC1	JLOC1_5540.1	732	8e-25	618 - 677	100	60 / 60	plus
Harvest21	ABC12775	726	3e-25	611 - 670	100	60 / 60	plus	ABC12775
Harvest35	U35_20600	726	3e-25	611 - 670	100	60 / 60	plus

Contig Sequence (726 bp)

>U35_20600 726 Hv_44K_v2
CTATAACGACAGTCACTCTGCTGGCTGCTGTCTCCTCACCCCACACACTCACAGAGAGGC
GCAGCAGCAGCAGCAGCAGCAGGCCATGGCTCAGGGAAGAGGCAGTGCGGGGCAGGTCTT
CGCCCTCGGCTTGCTCGTGCTGTGCCTCCTCCTCGGCGCCGCCACCGCCGGCGCCGCCAC
CTACAACGTGGACTGGTCGTTCGCCGCCGACAGCTGGTCCAGCGGCAAGAGCTTCCGCGC
GGGGGACGTCCTCGTGTTCAGCTACAACCCGGCCGTGCACAACGTGGTGGCGGTGGACGC
CGGCGGCTACAACAGTTGCCGGGGCTCCAGCGCGGCGTACACCTACACCTCGGGGAGCGA
CCACGTCACGCTCGTCCCGGGGACGAACTACTTCATCTGCAGCCTCAGCGGCCACTGCGG
GCTCGGGATGAAGATGGCCGTCACTGCAAACTGAAGCTGGCCGCAGCTTTCGGTTTCAAA
AAAGTTGGCTGCGCCTGCGATGCCATCTGTGCGCATGTGAAAACATCAATAAAAGTGTTG
TGGAACTCGATCGGTGACTCCTAGGCTCCTAGTACTACGTGATAGTGTACGCCCCGTGTG
TTGTATCCCTATGTTAAGCGGTTGTTATTCCGAAAGTACCTTTCTCACCTGACCTCATAG
TCTCCTGGTGCGAACAGTAAAATAAATAAAATAGAAAAATGTTTTAAATAAAAAAAAAAA
AAAAAA

Homology of Contig U35_20600 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None