barSeed - Barley Seed Development Database

Probe CUST_16274_PI390587928

Source Contig U35_20603

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16274_PI390587928	Hv_44K_v2	AAGAATCAGAAGATCAATAGACCCAGTGCAAAGGTTAGGCTGGAACTTACAGCTAAAAAA	1467	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61021.5	3951	9e-22	3256 - 3310	100	55 / 55	minus	ABC13102 ABC15405 ABC15406
MLOC	MLOC_61021.6	4934	9e-22	3256 - 3310	100	55 / 55	minus	ABC13102 ABC15405 ABC15406
Harvest21	ABC48217	454	3e-25	12 - 71	100	60 / 60	minus
Harvest35	U35_20603	1538	3e-25	1468 - 1527	100	60 / 60	plus

Contig Sequence (1538 bp)

>U35_20603 1538 Hv_44K_v2
CTCCATCGCACTGGAAAATAAAAAAGAGCTGAGCTGCTATTGGTGATGAATCTCCGGAAT
CTACTGGTTGCAGGTCAAGATCTCCGGCGGCGGGCGGTGCAACGTCACCAACGGGCACCA
TCTCGAGCCGTCGGGGCTGGCGAGAAATTATCCTAGGGGGCACAAGGAACTCCGGGGATC
GTTCTTTTGCAGTCATGGGCCACAGGATACCATGCACTGGTTCTCAGATCATGGTGTGGA
GCTTAAGACCGAAGATGACGGTAGAGTCTTTCCTGTCACTGACAACTCTGCATCGGTAGT
AGACTGCCTGCTGAACGAGGCGAGAAGACTGGGAGGCTGGTAAATCGGTGTCCGGTGCAT
CCGTCGATGACAACGGGAAGTTTGTTGTGAAAGTTGAGAAGCGTACCATTGATTTTGTCG
ATTACATCAGCGCTAATTATGTCTTGGTTGCTACAGGGAGCAGCCAGCAGGGCTACTCAT
TTGCTGCACATTATGGTCACTCTATTATTCCGCCGGTGCCAAGCTTATTCACATTTAAAA
TTGCAGACAAGCGACTGGCTGATCTCTCCGGGGTTACCTTCACAAGAGTCAAAGCAAAAT
TGATGCTAGATGGCATTCAGAAAAGCGCTCCTGAATTAACTCAGACTGGACCTATGTTGG
TTACACACTGGGGGCTTAGTGGCCCTGTTGTTCTCCGATTATCTGCATGGGGAGCACGTG
AACTTTATCAGGACAAGTACCAAGCAAAGCTCATGGTTGACTTCATACCTGACATTCACA
TTGAGGACGTGAAGCGCATCCTTTTCCAGCACAAAGACAAAAATGCGAAGAGCAAAGTAA
ATAACTCCTTTCCCAAGGAGTTTGGTCTGGTGAAGAGGTTTTGGGGATTCCTTCTAGAAC
AGGAGAGTTTAGATGGTGATATGCACTGGGCTACCGTACCGAAAAATCATCTAAATGCAA
TAGCCCTTCGTTTAAAACAGTGGATGTTTGAGGTTGTTGGGAAGGGTCAATTCAAAGATG
AATTCGTGACAGCTGGAGGTGTTCCACTTTCAGAGATATCGCTTAGCACTATGGAAAGCA
AGAAGCAGCCCAATCTGTTCTTTGCCGGAGAGGTTCTTAACGTCGACGGGGTCACCGGCG
GATTCAACTTTCAGAATGCATGGACTGGTGGGTACATAGCTGGGACAAGCATAGGCACAT
TGGCATCAACCAGCATCCTCAAAGAAGAGCAGGCTTGTTTGCAACTGCAAGCATCTTAAG
GAAATTCAGTGATTCAAGGATTCTTATTGGCTGACAAGCTTTGTAAAAGCTTCTGAGTGT
AGCTTGGCAGCACTGTAGGAGTAGCTCGAAAACAAGCAAAGATGACCAAGATTCACATCG
ACTAATTGTATTTTCGCGTCGCAGCGACAATTTTGTTGTGGAGTAAGACCAGCCTTGTGA
ATCCTTGTAAACTTGGCACTTGGCAGTAAGAATCAGAAGATCAATAGACCCAGTGCAAAG
GTTAGGCTGGAACTTACAGCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_20603 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g44160.2	359	1e-149	protein\|oxidoreductase, putative, expressed
Brachypodium v1_2	Bradi4g00497.1	428	2e-174
Arabidopsis v10	AT5G39940.1	480	6e-140	FAD/NAD(P)-binding oxidoreductase family protein \| chr5:15987649-15990561 FORWARD LENGTH=480