barSeed - Barley Seed Development Database

Probe CUST_16270_PI390587928

Source Contig U35_20607

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16270_PI390587928	Hv_44K_v2	TATTCCAGTGCAACGCTCTGTACTCAGAACAGCTTTCCTATGGTGGAGCAGCAAAGTTTT	325	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358997	3464	2e-24	2589 - 2648	100	60 / 60	plus	ABC13586
JLOC1	JLOC1_5149.2	3477	8e-25	2464 - 2523	100	60 / 60	plus
JLOC1	JLOC1_5149.1	3406	8e-25	2393 - 2452	100	60 / 60	plus
Harvest21	ABC13452	670	3e-25	326 - 385	100	60 / 60	plus
Harvest35	U35_20607	670	3e-25	326 - 385	100	60 / 60	plus

Contig Sequence (670 bp)

>U35_20607 670 Hv_44K_v2
GGTTGACTTGGAGGTAGATGACAGACGCAGACAGCAAGCTCAAATCAGTCTTCCTGCTGC
ACAACCAATGAGCAGTTCGGCATCTCTGTTGCAACCATGCACCAACCAGCTGAACAGTGA
GCAGCTCCTAAATGGCGCGAAGGGTGTTGGATTGGTCCCCTCTTATTCTCTGGGACACGT
GAATGGCATGAAACAGTCTATGGGCTTGCACTCCATGACAAACGAACACCTAGCTCAATC
AGGTCTGGCCCAGGAGCAGATGCAGTTGCTTGGTGAGAGGCACACCGGACTTTACTCGCA
GCAAGTTGAGAACAATATTAACATGTATTCCAGTGCAACGCTCTGTACTCAGAACAGCTT
TCCTATGGTGGAGCAGCAAAGTTTTGCTGGTCACGTGCCTGCGGATCGAAGTCGCAGCTG
GTTCCCTGGTGAGGAGCACCCACCACATAATAATTGGTCTGGGATGGGATCAAACGGCGT
CGTTTTAGGCCAGGATCTGCCTGCTGGGGACGGGAGCCTTCAGAGTGTCCTGTCCCAGTA
CAAGCAGGTATCTTCACGCCCGTTGGGCTCGGACCATCAGCCCCTTGGAGGAAGGAGGAA
TCTAGTTCCTCCTCATGGTGCTCAGGGCATAGCCCCAGCCCCAGCCCCAGTCCCAGGTAT
GTATGGTTAT

Homology of Contig U35_20607 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None