barSeed - Barley Seed Development Database

Probe CUST_16259_PI390587928

Source Contig U35_18300

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16259_PI390587928	Hv_44K_v2	TCGAGTGTATGGCTACTTCAGATAATGTCGTTCGCGCTGGTTTGACACCTAAATACAGAG	442	GeneList: darkgrey MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.033	0.239	1.378	2.601	1.228	1.063
Raw	9.142	113.240	544.786	1609.340	266.721	251.804

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366387	3996	2e-24	1248 - 1307	100	60 / 60	plus	ABC09791
MLOC	MLOC_14802.3	545	2e-24	386 - 445	100	60 / 60	plus	ABC09791
MLOC	MLOC_14802.2	1337	2e-24	663 - 722	100	60 / 60	plus	ABC09791
MLOC	MLOC_14802.1	1339	2e-24	696 - 755	100	60 / 60	plus	ABC09791
JLOC1	JLOC1_10114.1	1499	8e-25	686 - 745	100	60 / 60	plus
Harvest21	ABC09791	1166	3e-25	443 - 502	100	60 / 60	plus	ABC09791
Harvest35	U35_18300	1122	3e-25	443 - 502	100	60 / 60	plus

Contig Sequence (1122 bp)

>U35_18300 1122 Hv_44K_v2
GCGGAGATGGCCATCGCCGTCACCGACTTCCGCGCGCTCTTCGGCTTCGCCGGCATCGAG
GAGCTCAAGGATGTTATAAGGACTGTACCTGAAGTCGGAGGGCTGATTGGACATGAAGAC
GCTGACAAGCTTATGACTGTAAAAGAGTATCATGGGGGTAATGATGTAAAATCCAGTCTG
CAATCAGCATTCGCTAAGCTAATGACAGCAAGTAAAGAAGCAGTTTCCGAAGCAGTTAAT
AAATTGAAGGGTCGCCTGAATGATGAGAGCAAGATTCGGACGTTAACAGAGAAGGAAGAG
CTTGTTTTGTCTCTGGAGAGGCAGTATCCAGAAGATGTTGGTGTTCTAGCCGCACTTCTC
TTCAACTATGTCAAGCTCAGTCCTGGTGAAGCAATCTATATAGGTGCCAATGAACCACAC
GCATACCTGTCCGGGGAATGCATCGAGTGTATGGCTACTTCAGATAATGTCGTTCGCGCT
GGTTTGACACCTAAATACAGAGATGTGCAGACGCTTTGCTCAATGCTAACATACAAGCAG
ATCTTCCCTGAAATACTGCGAGGGGTACCCGTGCAGCCATACGTACGACGCTACACGCCT
CCGACCGACGAGTTTGAGGTCGACTGTTGCTTGCTACCTCCAGGCGAAGTGGCTGTGATG
GCCCCGGTACCAGGTCCATCCATCTTCCTTGTCATGACCGGGGAAGGCGAGGTTCAGATA
GACTGCATGTCAGACGGCGAGAAGGCAAAGGAAGGCGACGTTTTCTTCGTGCCCGCGCAT
ACGGAGGTTAAGCTCTCCGCCTGTGGCCATGCGTCGATGCAGCTGTACAGAGCCGGGGTG
AACGGCAGAGCCTTGTATGCCGGCAACGCTGCTGCTGCAGGGAAGAGGTCCCAGCTGCAG
AACATATGCGAAATGGCGAGTTAGCTGGAGCGCCGATAATATCATATACTGTATAGGCTT
ATAATCGATGGAAGTGCCGTCGGATGGACGAGTAATAAGGTCCTTGTTGTCAAGGCCCCT
TGCATATAGGTCTTCTGCATGCTTTGCTCCCTGCTGTTAGAGTACCAGGTACAAATTAAC
TGATGGAGGTTGTAGTGTATTTAAGTTCAAAAAAAAAAAAAA

Homology of Contig U35_18300 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g03710.1	429	4e-160	protein\|mannose-6-phosphate isomerase, putative, expressed
Brachypodium v1_2	Bradi2g01950.1	448	3e-173
Arabidopsis v10	AT3G02570.1	432	2e-98	\| Symbols: MEE31, PMI1 \| Mannose-6-phosphate isomerase, type I \| chr3:543463-545478 REVERSE LENGTH=432