barSeed - Barley Seed Development Database

Probe CUST_16248_PI390587928

Source Contig U35_20622

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16248_PI390587928	Hv_44K_v2	GGCTTGTGTGATGTAATTTGCCACTTCATGATGTAAAAAAGTATAAATGAAATCAGCGTC	1243	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.778	3.093	1.264	0.718	0.421	0.346
Raw	33.848	87.476	32.261	29.547	4.922	3.861

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250031.1	3863	2e-24	3749 - 3808	100	60 / 60	plus	ABC05146 ABC14348
MLOC	MLOC_48873.1	771	2e-24	419 - 478	100	60 / 60	minus	ABC14348 ABC15661
JLOC1	JLOC1_31336.1	781	8e-25	418 - 477	100	60 / 60	minus
Harvest21	ABC14348	1326	3e-25	1244 - 1303	100	60 / 60	plus	ABC14348
Harvest35	U35_20622	1358	3e-25	1244 - 1303	100	60 / 60	plus

Contig Sequence (1358 bp)

>U35_20622 1358 Hv_44K_v2
GATTTAAAAGACAAAAAATATCTAGCTTGCAGATTCTGCCAGTGTTTTTGCTAAATCAAA
TTGTTTCCTCAACTGATACAGGGAGCCAACTGCGATATTTCAAAATCCGATCAAACCAGT
GATAGGAGTTCCAGAATGATATTGGATTCGTGTGCTTGGTACACTGCTGCTTCTTCATCT
CTCATGTGTCCAAATCACCATTTGCCTCAAGGGCGAGAGGAGGATCCAGTGTCCAGTTGC
AACAACCTCAGAAGCTAGTCCAAACTAGTGGGAGGTTGTGTGTACAAACAAGAAGATAGA
CTGAAGAATAGTAATGGCTCGTGGTAAGGTTCAGATGAGAAGGATAGAAAACCCGGTGCA
CAGGCAGGTCACCTTCTGCAAGCGGCGAATGGGCCTCCTGAAGAAGGCAAAGGAGCTGTC
TGTTTTATGTGATGCTGATATCGGTGTCATGGTGTTTTCTCCTCATGGGAAGGTTTACGA
GTTAGCTACCAATGGGAATATGCAAGGCTTAATTGAGAGGTACAAGGGTAGCAACACAGA
AGCACATGGTGAAAGTGGCGAGCAGAACAAACCTCAGGTAATACAGCAAGAGGTGCTACT
CTTAAGGCAAGAAATTGACTTACTTCAAAAGGGCTTAAGGTACATGTATGGAGAGAATGA
TACAAACCACATGAATCTCAATGAGCTGCAAGCCCTGGAGAGTAACCTTGAAATTTGGGT
ACACAATATCCGCTATACAAAGATGCAGATCATATCTAGGGAGATTGAGATGCTCAAGAC
CAAGGAAGGCGTACTGAAGGCTGCCAATGATATACTTCAAGAAAGGATAATTGAGCAGAG
CGGGTTTCTGGACACTAGCAGCAACATGATGATGCCACAACTTCCCTTCCAGCGAACCAT
GGAGAGTGACTACTACTTCTAGCGTAAACAACCAACCTATCAAGCTATGTCGACAGTTTG
ACAAGGCTACCCTTTATGGAACCCCCATAACCTTATGTGTGCCACTTCATGTTGTAAAAA
GGAAAAAGAAGATCAGCATCTGCCAACGTACATGCTTTTTCCTATGTAAATTCATCATCT
TTCAGATTGAACAGTTCGCAGATTGCATGATGTTGCTGCAGTTTCCCCTCCAGCAACCAT
GGACAGCAAGTATTCGTGTAGCATGAACGACCGTCCTATCAAGCTATCTTCTACATAGTT
CTGATTTGTGATCGACAAGGCAATCTTGCAAGGACGTCTCATAGGCTTGTGTGATGTAAT
TTGCCACTTCATGATGTAAAAAAGTATAAATGAAATCAGCGTCTGTATCTATAAAAGCTT
TGCATGTGTAAATTCATCGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_20622 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g02070.1	223	2e-73	protein\|OsMADS26 - MADS-box family gene with MIKCc type-box, expressed
Brachypodium v1_2	Bradi5g11270.1	203	4e-120
Arabidopsis v10	AT1G71692.1	211	2e-59	\| Symbols: AGL12, XAL1 \| AGAMOUS-like 12 \| chr1:26952903-26954939 REVERSE LENGTH=211