barSeed - Barley Seed Development Database

Probe CUST_16247_PI390587928

Source Contig U35_20623

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16247_PI390587928	Hv_44K_v2	CAGATTGTAGTTTAAAAGTTCAGGTTTCTGCTGAACTTGAGGGGGACATTTGCTTGGTGG	889	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.974	0.834	0.720	0.594	1.345	1.198
Raw	3.700	4.002	2.976	3.956	3.608	3.683

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58956.1	2768	7e-23	2326 - 2385	98	59 / 60	minus	ABC21227
MLOC	MLOC_58956.2	3472	7e-23	2301 - 2360	98	59 / 60	minus	ABC21227
MLOC	MLOC_58956.3	3390	7e-23	2219 - 2278	98	59 / 60	minus	ABC21227
JLOC1	JLOC1_38331.3	3515	4e-23	1038 - 1097	98	59 / 60	plus
JLOC1	JLOC1_38331.2	3444	4e-23	967 - 1026	98	59 / 60	plus
JLOC1	JLOC1_38331.1	4013	4e-23	1016 - 1075	98	59 / 60	plus
Harvest21	ABC34816	656	3e-25	594 - 653	100	60 / 60	plus
Harvest35	U35_20623	952	3e-25	890 - 949	100	60 / 60	plus

Contig Sequence (952 bp)

>U35_20623 952 Hv_44K_v2
ATTCCCGGCAGCTGGCGTGACTGCCTCTGAACCCGGCCCCATCTCAGCACCCGTGACCCG
CCCCTGGCCCCGCCTCCGCCGAAAACAAAAACCCACCGCCGGCGGGCCACCGCACACTCC
ATCATCATCCCACCTCTTCCGCTTGGAGCGCGGCATCCACCCGAGCAAGCGATCCGGCGA
GATGTCGGCAGAGGCTGCTGCTGCGGCGGCGGCGAGCGTGGGCAAGCTGGTGCTCGACAC
TGGCTGGCTCGCCGCGCGCTCCACCGAGGTGTCCCTCACCGGCGTCGACCTCACCACCAC
CCACCCGCCGGACGCCTCCGTTGCCGCCCCGTGGATGCACGCCGCCGTCCCCGGAACCGT
GCTGGGGACCCTTCTAAAAAACAAGTTGATTCCGGACCCCTTCTACGGGCTGAACAACGA
GGCAATCATCGACATCGCCGATTCCGGGAGGGACTACTACACATTCTGGTTCTTCACCAC
CTTCCAGTGTGCTCCGGCAGCAAACCAGCACGTGAGTTTAAATTTCCGTGGAGTAAACTA
CTCAGCAGAAGTGTACATAAATGGACACAAAGAGATACTTCCAAAAGGAATGTTCCGAAG
GCACACCCTTGATATTACTGAAGTTCTTCATCCTGAGGGTAGCAATCAGCTTGCTGTCCT
CGTTCATCCTCCTGATCATCCTGGCAAGATTCCTCCTCAGGGAGGTCAAGGCGGTGATCA
TGAGATTGGAAAAGATGTTGCTACGCAATATGTTGAAGGATGGGATTGGATGTGCCCAAT
AAGGCTGTGAACATAATCGACCCCCATCTGGTTTCAACTTTTCATGACGATTTTAAGAGA
TCGTACCTACATTGTACACTTCAGTTGGAGAACAAAAGTTCATGGCTCGCAGATTGTAGT
TTAAAAGTTCAGGTTTCTGCTGAACTTGAGGGGGACATTTGCTTGGTGGAAC

Homology of Contig U35_20623 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g32530.1	985	7e-104	protein\|mannosylglycoprotein endo-beta-mannosidase, putative, expressed
Brachypodium v1_2	Bradi2g26600.1	980	6e-113
Arabidopsis v10	AT1G09010.1	944	7e-92	glycoside hydrolase family 2 protein \| chr1:2895259-2899287 REVERSE LENGTH=944