- Probe CUST_16228_PI390587928
- Source Contig U35_20632
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_16228_PI390587928 | Hv_44K_v2 | GGTCGTTGCGATGGCTAGTTTGTGTTGATATTTTATTTCAAAATCGTGTGTACTTTTCTA | 543 | GeneList: paleturquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 14.217 | 6.343 | 1.139 | 0.607 | 0.908 | 0.809 |
| Raw | 101.880 | 65.687 | 12.065 | 8.793 | 2.934 | 2.976 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK355270 | 1774 | 2e-24 | 1584 - 1643 | 100 | 60 / 60 | plus | ABC16732 ABC41220 |
| MLOC | MLOC_77689.1 | 2159 | 2e-24 | 1812 - 1871 | 100 | 60 / 60 | plus | ABC16732 ABC34962 ABC41220 |
| MLOC | MLOC_77689.2 | 1608 | 2e-24 | 1261 - 1320 | 100 | 60 / 60 | plus | ABC16732 ABC34962 ABC41220 |
| MLOC | MLOC_77689.3 | 1671 | 2e-24 | 1324 - 1383 | 100 | 60 / 60 | plus | ABC16732 ABC34962 ABC41220 |
| MLOC | MLOC_77689.4 | 1873 | 2e-24 | 1526 - 1585 | 100 | 60 / 60 | plus | ABC16732 ABC34962 ABC41220 |
| JLOC1 | JLOC1_51796.1 | 2106 | 8e-25 | 1709 - 1768 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC16732 | 646 | 5e-23 | 545 - 603 | 98 | 58 / 59 | plus | ABC16732 |
| Harvest21 | ABC41220 | 462 | 2e-21 | 42 - 101 | 97 | 58 / 60 | minus | ABC41220 |
| Harvest35 | U35_20632 | 645 | 3e-25 | 544 - 603 | 100 | 60 / 60 | plus |
Contig Sequence (645 bp)
>U35_20632 645 Hv_44K_v2 AGGCCACCGTCATCGACGCCGGCACGAACCAGCTCACGGGAACCATACCGGCCTCGTACG CGTGCCTGCGGAAGGTGGAGCAGCTGAACCTGGCGGACAATCTCCTCTACGGCGAGGTGC CCGACGCGCTGTGCCGGCTCGCGTACCCGTCGTCGGGCGGCCACCTCGCCAACCTCACGC TCTCGGACAACTACTTCACGTCGCTGGGGTCGTGCTGCTGGACCCTGATCAAGCAGGGGA AGCTCAACGTCGCCCGCAACTGCATCCCCTATGCGCCCAACCAGCGGTCGCACGAGGAGT GCGCCGGCTTCTTCCACAGGACCAAGACCACGTGCCCCGTCAGCGCCTACGTGCCATGCC ACCACTACGCCGCCGGTAAGGAGGAAGCCTCGGCGTCGGAGGAGAACAAGTACCGGACCT ACTCGGCGCTGCACCCGTGAGTCCGTGGCTCCCAGCAGCAGTCAGCACGGCCGGCGAGGG CACACGTACACGTGCTGAAAAACAAATTGGGAATGCACCTGTGCGTCTCGTCGCGGCTGC TTGGGTCGTTGCGATGGCTAGTTTGTGTTGATATTTTATTTCAAAATCGTGTGTACTTTT CTAAGTATTTATTATGTTCGCTTTCTCAAAAAAAAAAAAAAAAAA
Homology of Contig U35_20632 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os04g42620.1 | 455 | 2e-67 | protein|uncharacterized protein At4g06744 precursor, putative, expressed |
| Brachypodium v1_2 | Bradi5g15010.1 | 451 | 1e-62 | |
| Arabidopsis v10 | None |