barSeed - Barley Seed Development Database

Probe CUST_16227_PI390587928

Source Contig U35_20633

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16227_PI390587928	Hv_44K_v2	TTCAATGGCTGTTGATTCCGTGGTAACAAACCTAAAGGGCATGGCCAGAATGATCAACAC	484	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.664	1.973	1.121	0.664	0.497	0.368
Raw	2259.233	2209.157	1271.920	1107.359	309.082	252.752

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66031.3	2141	2e-24	635 - 694	100	60 / 60	plus	ABC05134 ABC08279 ABC08280
MLOC	MLOC_66031.4	1904	2e-24	401 - 460	100	60 / 60	plus	ABC05134 ABC08279 ABC08280
MLOC	MLOC_66031.1	2200	2e-24	621 - 680	100	60 / 60	plus	ABC05134 ABC08279 ABC08280
JLOC1	JLOC1_43497.1	2417	8e-25	715 - 774	100	60 / 60	plus
Harvest21	ABC15999	858	3e-25	649 - 708	100	60 / 60	plus
Harvest35	U35_20633	1188	3e-25	485 - 544	100	60 / 60	plus

Contig Sequence (1188 bp)

>U35_20633 1188 Hv_44K_v2
CAACGCCATTCTCCATTCCTCCCTCCGTCGCCATGTACCGCGCCGCCGCCAGCCTCGCCT
CCAAGGCCCGGCAAGCCGGGAGCAGCGCCCGACAGGTCGGGAGCAGGCTTGCCTGGAGCA
GGAACTATGCCGCCAAGGACATCAGGTTCGGCGTCGAGGCCCGCGCCTTGATGCTCAAGG
GTGTCGAAGACCTGGCTGATGCGGTGAAGCTGACCATGGGTCCCAAGGGGCGCACTGTTA
TTATTGAGCAAAGCTTTGGTGCTCCCAAAGTTACAAAGGATGGAGTCACTGTTGCCAAGA
GCATTGAATTCAGTGACAGAGTCAAGAATGTAGGTGCAAGTCTTGTGAAGCAGGTTGCTA
ATGCCACTAATGATACTGCTGGCGATGGTACAACATGTGCTACTGTTCTGACAAAGGCAA
TATTCACTGAGGGTTGCAAGTCCGTTGCAGCTGGTATGAATGCAATGGATCTGAGACGTG
GTATTTCAATGGCTGTTGATTCCGTGGTAACAAACCTAAAGGGCATGGCCAGAATGATCA
ACACGTCTGAGGAAATAGCACAGGTGGGTACTATATCAGCTAATGGCGAAAGGGAAATTG
GTGAGCTCATTGCAAAGGCTATGGAGAAGGTTGGTAAAGAGGGAGTTATCACCATTGCGG
ATGGTAATACTCTATACAACGAGCTTGAAGTTGTGGAAGGCATGAAGCTTGACAGAGGTT
ACATATCTCCATACTTTATTACCAACCAAAAGAATCAGAAATGTGAACTAGACGATCCCT
TGATCTTGATACACGATAAGAAAGTATCCAACCTTCGCTCCCTGGTCAAAGTGTTGGAGT
TTGCTCTCCAGAAGCAAAAGCCTCTGCTTATTGTTGCAGAAGATCTAGAAAGTGAAGCAC
TGGGTACACTGATTCTTAACAAGCTTCGTGGGGGCTTCAAGGTCTGTGCGATCAAAGCTC
CTGGTTTTGGAGAGAACAGGAAATCCAATTTACAGGACCTTGCTATCCTTACTGGTGGAG
AAGTCATAACTGAAGAACTTGGAATGAACCTTGAGAACTTTGAGCCTAGCATGCTGGGTA
CCTGCAAGAAGGTTACCATATCTAAGGATGACACTGTCATCCTTGATGGAGCGGCCGCTG
GGGGCATATGCTCTCGCACGCATCGATGTGTCCGCATGTAACGCTACT

Homology of Contig U35_20633 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g04970.1	578	protein\|T-complex protein, putative, expressed
Brachypodium v1_2	Bradi1g75520.1	576
Arabidopsis v10	AT3G23990.1	577	\| Symbols: HSP60, HSP60-3B \| heat shock protein 60 \| chr3:8669013-8672278 FORWARD LENGTH=577