barSeed - Barley Seed Development Database

Probe CUST_16226_PI390587928

Source Contig U35_20634

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16226_PI390587928	Hv_44K_v2	TTTGGTGCTCCCAAAGTTACAAAGGATGGAGTCACTGTTGCCAAGAGCATTGAATTCAGT	418	GeneList: brown4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.689	1.188	1.388	0.816	0.565	0.456
Raw	442.848	412.537	488.127	422.066	108.230	98.986

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66031.3	2141	2e-24	405 - 464	100	60 / 60	plus	ABC05134 ABC08279 ABC08280
MLOC	MLOC_66031.4	1904	2e-24	171 - 230	100	60 / 60	plus	ABC05134 ABC08279 ABC08280
MLOC	MLOC_66031.1	2200	2e-24	391 - 450	100	60 / 60	plus	ABC05134 ABC08279 ABC08280
JLOC1	JLOC1_43497.1	2417	8e-25	485 - 544	100	60 / 60	plus
Harvest21	ABC15999	858	3e-25	419 - 478	100	60 / 60	plus
Harvest35	U35_20634	478	3e-25	419 - 478	100	60 / 60	plus
Harvest35	U35_20633	1188	3e-25	255 - 314	100	60 / 60	plus

Contig Sequence (478 bp)

>U35_20634 478 Hv_44K_v2
GATCCAACGCCATCCTCCATTCCTCCCTCCGTCGCCATGTACCGCGCCGCCGCCAGCCTC
GCCTCCAAGGCCCGGCAAGCCGGGAGCAGCGCCCGACAGGTGAGCGGATTGTCCTGGTCC
CGCGCCGATCGCCGGGCGGAAATGGCTTCAATCTGACGGATTCGTCGTCCGCCCGCCCGC
CCCAATGTGGGGCAGGATGCGAGGTTTTTTTTGTTTCTGTCCTGGTGCGGTAACGTGCTT
TGCGTGTGGTGCTGCGCAGGTCGGGAGCAGGCTCGCCTGGAGCAGGAACTATGCCGCCAA
GGACATCAGGTTCGGCGTCGAGGCCCGCGCCTTGATGCTCAAGGGTGTCGAAGACCTGGC
TGATGCGGTGAAGCTGACCATGGGTCCCAAGGGGCGCACTGTTATTATTGAGCAAAGCTT
TGGTGCTCCCAAAGTTACAAAGGATGGAGTCACTGTTGCCAAGAGCATTGAATTCAGT

Homology of Contig U35_20634 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None