barSeed - Barley Seed Development Database

Probe CUST_16216_PI390587928

Source Contig U35_27559

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16216_PI390587928	Hv_44K_v2	ATGAATCTTCAGCGCAAAAGGAAGGGAAAGATAGAGAGTTTAGAGGCAACAACCGCGGTA	728	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358539	1981	2e-24	911 - 970	100	60 / 60	plus	ABC17391
MLOC	MLOC_61639.1	1601	2e-24	1308 - 1367	100	60 / 60	minus	ABC17391
JLOC1	JLOC1_40281.1	1525	8e-25	249 - 308	100	60 / 60	plus
Harvest21	ABC24407	875	3e-25	729 - 788	100	60 / 60	plus
Harvest35	U35_27559	875	3e-25	729 - 788	100	60 / 60	plus

Contig Sequence (875 bp)

>U35_27559 875 Hv_44K_v2
CCCGCCCTAGCTTCCCCTCATCTCATCTCCTCCTGCTCGAAAGGTCAAGAAGGTGTTCAA
GGACGCCGACGACGACGCCGGGCACCGGCTCAACAACGACATCACCGCCCCCTTCCTCCG
GCTCGTCACCGACGGAGGGCATGATGTTGTCCCCCGGCACGAGGCGCTGCAGATGGCCGC
CAGGATGGGGTTGGACCTGGTCGAGGTCGACCGGAAATCGAACCCTCCGGTTTGCAAGAT
CATGGACTTCCACAAGGAGAAGTATAACAAGGATGTCCAGCAGAAACAGCGCCTGAAAAC
CAAGTCTGCTATTGCTTTGCGTGGTGGTGATATCAAAGAAGTGCGGTTTAAGGCGAAAAC
TGAAATTAAAGACATGAAGGTGAAAGCAGATGCAATTACCAGGCTGATGGAGCGTGGATA
CAAGGTGAAGTGCATGGCGATGCCCGCAGGTAACGAAGCAGAAGATTTAGGCGGACCGCT
ATCTCGGTTATTAGGACTGATACAAGATGTCTGCACTGTGGAAAGCGGTCCGCATTTGGA
CTCGAAGCATGCATATGTTATTGTCAGGCACGTGAAGTTTGCAACCAAGAAAGGTGGAAA
GAAAGCAAGCCAGGCCATAGAAGACGCAAGCAAAGGCACCCCCCACGCCGCTACCTCCGA
ATCGTCAGCCACTAGCGCTGATAGCGGGGATGAGACAAACGAACATGGTCTGGAAGCTGA
GGATCCCCATGAATCTTCAGCGCAAAAGGAAGGGAAAGATAGAGAGTTTAGAGGCAACAA
CCGCGGTAACTTGGACAAGAGCATGGGTGCTGCAGGAAACAGGATTCGCCCTGGTCCGGG
GGGACCCCAATCATCGCAACCTGGACTTGGTTCCA

Homology of Contig U35_27559 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g01110.1	520	9e-106	protein\|translation initiation factor IF-3, putative, expressed
Brachypodium v1_2	Bradi3g00290.1	522	1e-123
Arabidopsis v10	None