- Probe CUST_161_PI415269222
- Source Contig TA45644_4513
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_161_PI415269222 | Hv_44K_v2 | TTCATGTCTATACCTCATCTGGTGATATGTTTTCCAAATCTAGCATGTTTGACAGCACAC | 958 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_64388.11 | 2402 | 2e-24 | 1495 - 1554 | 100 | 60 / 60 | plus | ABC24807 |
| MLOC | MLOC_64388.8 | 2976 | 2e-24 | 1522 - 1581 | 100 | 60 / 60 | plus | ABC19630 ABC24807 |
| MLOC | MLOC_64388.1 | 2432 | 2e-24 | 1736 - 1795 | 100 | 60 / 60 | plus | ABC24807 |
| MLOC | MLOC_64388.2 | 2336 | 2e-24 | 1727 - 1786 | 100 | 60 / 60 | plus | ABC24807 |
| MLOC | MLOC_64388.12 | 2445 | 2e-24 | 1559 - 1618 | 100 | 60 / 60 | plus | ABC24807 |
| MLOC | MLOC_64388.7 | 2478 | 2e-24 | 1595 - 1654 | 100 | 60 / 60 | plus | ABC24807 |
| MLOC | MLOC_64388.10 | 2366 | 2e-24 | 1592 - 1651 | 100 | 60 / 60 | plus | ABC24807 |
| MLOC | MLOC_64388.4 | 2764 | 2e-24 | 1607 - 1666 | 100 | 60 / 60 | plus | ABC19630 ABC24807 |
| MLOC | MLOC_64388.14 | 4073 | 2e-24 | 1564 - 1623 | 100 | 60 / 60 | plus | ABC19630 ABC24807 |
| MLOC | MLOC_64388.13 | 4065 | 2e-24 | 1556 - 1615 | 100 | 60 / 60 | plus | ABC19630 ABC24807 |
| MLOC | MLOC_64388.3 | 2535 | 2e-24 | 1616 - 1675 | 100 | 60 / 60 | plus | ABC24807 |
| MLOC | MLOC_64388.6 | 2577 | 9e-22 | 1711 - 1765 | 100 | 55 / 55 | plus | ABC24807 |
| JLOC1 | JLOC1_42278.4 | 4071 | 8e-25 | 1509 - 1568 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42278.3 | 3003 | 8e-25 | 1509 - 1568 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42278.2 | 4087 | 8e-25 | 1525 - 1584 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_42278.1 | 3019 | 8e-25 | 1525 - 1584 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC14996 | 1097 | 3e-25 | 958 - 1017 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_7014 | 1097 | 3e-25 | 958 - 1017 | 100 | 60 / 60 | plus |
Contig Sequence (1018 bp)
>TA45644_4513 1018 Hv_44K_v2 GCGACTAATCCGATCGCACTTCGGATGGAAGTACTTTGTCAATCTAGTGGAAATGATGTC TGCCCACCAGGAGGTGTTGGCATTTATAATCCTGGTTTCTGGGGCATGAATATTGAGGAA GCAAAGGTTTATAAAGTCAGCATGTACATCAGGTCATCAGACTCCATGGATCTAACAGTT TCCTTGACAAGCTCAGATGGTCTTCAGAATCTAGCTGCTTATACCATCACGGCTGATAAG GAAGAGTTTAAAGAGTGGACGAAGGTTGAGTTTGATCTGCAATCAAGTGGAAGAAATTAT AACTCAAGGCTTCAGCTTACGACCACAAAAAGTGGCATAGTTTGGTTTGATCAAGTATCA CTTATGCCATCTGATACTTACATGGGGCATGGTTATCGTAAAGATCTTGCGTCTATGCTG GCAAATCTAAAGCCTAAATTTTTGAAATTCCCAGGTGGAAACTATGTCATGGGAAACTAT CTGTTAAATGCATTTCGCTGGAGTGAAACTGTTGGACCCTGGGAGGAGAGACCTGGTCAT TTTAATGATGTTTGGGGCTACTGGACTGATGATGGACTTGGATTCTTTGAGTTCCTTCAA TTAGCAGAAGACCTTGGTGCTTGCCCAGTTTGGGTGGTCAATGATGGGGCTAGCCGATAT GAACAAGTATCATCTGCCACAATAGCTGCTTTTGTAAAGGATGTTGTTGACAGTATTGAG TTTGCAAGGGGAGACCCTGGGACTTCATGGGGTTCAGTTCGTGCAGCAATGGGACACCCA GAGCCCTTTCAGCTTAATTATATTTCTATGGGAAATCAGGAATGCTCAATGCACTACTAT AAAGAGAATTACCGCAAGTTCTACTCTGCAATAAAAGCATCCTACCCAGATATCAAAATC ATATCCAGCTGTGATAGATCTACCATTTCACCAGTCGCACCTGCTGATCTGTATGATGTT CATGTCTATACCTCATCTGGTGATATGTTTTCCAAATCTAGCATGTTTGACAGCACAC
Homology of Contig TA45644_4513 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g20420.3 | 518 | 0.0 | protein|alpha-N-arabinofuranosidase A, putative, expressed |
| Brachypodium v1_2 | Bradi1g63990.2 | 676 | 0.0 | |
| Arabidopsis v10 | AT5G26120.1 | 674 | 1e-145 | | Symbols: ATASD2, ASD2 | alpha-L-arabinofuranosidase 2 | chr5:9121835-9125399 REVERSE LENGTH=674 |