- Probe CUST_16189_PI390587928
- Source Contig U35_27568
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_16189_PI390587928 | Hv_44K_v2 | CGGTCGGAGAGATGAAGCGCCTAACTTTACAAGTAATAACAGCAGATTTACCTTAAAAAA | 364 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.486 | 1.430 | 1.246 | 0.841 | 0.340 | 0.421 |
| Raw | 9528.250 | 14596.777 | 10979.983 | 11752.013 | 1649.983 | 2232.547 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest35 | U35_27568 | 435 | 3e-25 | 365 - 424 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_17154 | 2193 | 6e-22 | 1914 - 1967 | 100 | 54 / 54 | plus |
Contig Sequence (435 bp)
>U35_27568 435 Hv_44K_v2 CGCGGCTGCCGGCCGAGACCGGGCAGGACGACGACACCGGGTACGACGAGTGCATCGTGC CCAGCGACATGAATCTCATCACAGATCAAGATTTCAGAGATCTGGTGCAGAAGGTCCCAG ATGGTTGCATTTTTACCATCGTCTCTGACTCATGCCACAGTGGTGGCCTACTGGACAAGG CAAAGGAACAGATAGGCAACAGCACCAGGCAGAATCAGACCCAGTCTCGTGAACCCGAAG CCACCTCGTGGTCATGGGTCGGCATGGCACAGAGAGTGCATAAATTGACGAGGGTGGTAA TTATTCTTGTTGCGCCATTCCACACAAACATGGTGTTTCAGTTTTGAATGATGATACGGT TGGTCGGTCGGAGAGATGAAGCGCCTAACTTTACAAGTAATAACAGCAGATTTACCTTAA AAAAAAAAAAAAAAA
Homology of Contig U35_27568 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |