barSeed - Barley Seed Development Database

Probe CUST_16182_PI390587928

Source Contig U35_39549

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16182_PI390587928	Hv_44K_v2	GGTTCTTCTTTCTTCTGCAGCTTATAATGATGCTATGGTGCTACTTTATGGTTGTTTTTA	234	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249789.1	1642	2e-24	300 - 359	100	60 / 60	plus	ABC08786 ABC09080 ABC09081 ABC09082
MLOC	MLOC_47528.1	294	2e-24	201 - 260	100	60 / 60	minus	None
MLOC	MLOC_29180.1	436	2e-24	211 - 270	100	60 / 60	minus	None
MLOC	MLOC_68301.1	1303	7e-23	1204 - 1263	98	59 / 60	minus	None
JLOC1	JLOC1_45179.1	232	4e-23	108 - 167	98	59 / 60	minus
Harvest21	ABC35725	447	3e-25	235 - 294	100	60 / 60	plus
Harvest35	U35_39549	447	3e-25	235 - 294	100	60 / 60	plus

Contig Sequence (447 bp)

>U35_39549 447 Hv_44K_v2
GGAACAAAGCCTTAGGGTGCATACCTGAAGGAGTGCATCTACTGGTTCAGCTGAAAAATT
ATCTCTATTAGGTTTTTGCGTTCGGGTTTGCGTGTCACTCGTCCTTGGTATGCTCAATCC
ATCTTGGCTGCTCTGCTTGCCTACTTCTCCTCTTCAATTCAGCAGGTTATGCGATCTCCT
GTGTTGACGCGTCCCGATCTCCTGCTTTGTTGCATCTCTGTTCTGCTCCTCGAGGGTTCT
TCTTTCTTCTGCAGCTTATAATGATGCTATGGTGCTACTTTATGGTTGTTTTTACGAATC
CTGGAGCTGTACCAGGAAACTGGAGACATGCTGCTGAAGAGGATGGTATGTATCCGAACA
ACAGTAGCACCATATCAGATAATGTTGCTACAGATTGTGCGAATCGTCCATCCACTTCAG
AGGAGCAAGGACATGCGCCTAGATATT

Homology of Contig U35_39549 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None