barSeed - Barley Seed Development Database

Probe CUST_16178_PI390587928

Source Contig U35_15593

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16178_PI390587928	Hv_44K_v2	CATGTGGTCATGTTTATCTCTGAACATTCGGATTCAAATTCAGTAAAGTGTTATGTGCCC	712	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.168	0.272	0.840	1.519	1.229	1.576
Raw	5107.753	13036.907	35264.567	95360.800	28243.600	39500.300

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_3802.3	2155	2e-24	2096 - 2155	100	60 / 60	plus	ABC03532
MLOC	MLOC_3802.2	2938	2e-24	2718 - 2777	100	60 / 60	plus	ABC03532
JLOC1	JLOC1_2288.1	4487	8e-25	918 - 977	100	60 / 60	plus
Harvest21	ABC32065	414	3e-25	18 - 77	100	60 / 60	minus
Harvest21	ABC03532	1014	3e-25	901 - 960	100	60 / 60	plus	ABC03532
Harvest35	U35_15593	796	3e-25	713 - 772	100	60 / 60	plus

Contig Sequence (796 bp)

>U35_15593 796 Hv_44K_v2
GGACAAGCATTACTGCGCACACTCGCCATCTCGCCACGTGAGAGGAGAAGCCCAGGGCGC
AAGTGTTTGAGCGGATCGGGAAAGGAGCCAGCGCGATGGCCGGCGGCGCGGACGCGGACG
GGGAGCGGAGGATCGGGGTGGCGATGGACTACTCGGCGAGCAGCAAGCGGGCGCTGGAGT
GGGCCGTCAAGAACCTGCTCCGCCGGGGCGACACCGTCGTCGTCCTCCACGTCCTGCGCC
ACGGCGGGGAGGAGGCCAAGCACGCCGTCTGGGCCAAGTCCGGATCCCCGCTGATCCCCC
TGTCGGAGTTCCGGGAGCCGGAGGTGATGAAGAACTACGGCGTCACCTGCGACGCCGAGG
TGCTCGACATGCTCGACACCGCCGCGCGCCAGCTCGAGCTCAAGGTGGTGGCGAAGCTGT
ACTGGGGCGACGCCAGGGAGAAGCTCTGCGATGCGGTGGAGGAGCAGAAGATCGACACCA
TCGTCATGGGCAGCCGCGGCCTCGGTCTCATCCAGAGGATTCTTCTAGGAAGTGTGACCA
ACTACGTGTTGTCGAACGCGTCGTGCCCTGTGACAGTCGTGAAGGGAGACTGCTAGGTTT
GTGATCGGTGTTAATCAGGCAGGATGCACATCATGGTTTTCTGCCCTGTTACTGTATCCG
AATAAATTATGGTGGCTATTGTGTTTTCTATATGCCGGAGCTTTGACGAATTCATGTGGT
CATGTTTATCTCTGAACATTCGGATTCAAATTCAGTAAAGTGTTATGTGCCCAAAAAAAA
AAAAAAAAAAAAAAAA

Homology of Contig U35_15593 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g37970.3	166	7e-82	protein\|universal stress protein domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g23560.1	168	1e-86
Arabidopsis v10	AT3G53990.1	160	2e-55	Adenine nucleotide alpha hydrolases-like superfamily protein \| chr3:19989658-19991019 REVERSE LENGTH=160