barSeed - Barley Seed Development Database

Probe CUST_16171_PI390587928

Source Contig U35_15599

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_16171_PI390587928	Hv_44K_v2	GGTGTTGTTGCCTGTTGCATGTAACGTGATCGCGTCTATGTTTTGCTGTTCTTCAAAAAA	1271	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	9.492	7.146	2.432	0.586	0.156	0.134
Raw	1877.365	2449.658	675.117	275.222	24.342	23.266

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_541.1	514	2e-21	368 - 421	100	54 / 54	plus
Harvest21	ABC04125	1529	1e-23	1383 - 1443	98	60 / 61	plus
Harvest21	ABC04124	753	1e-23	12 - 72	98	60 / 61	minus	ABC04124
Harvest35	U35_15599	1418	3e-25	1272 - 1331	100	60 / 60	plus

Contig Sequence (1418 bp)

>U35_15599 1418 Hv_44K_v2
TCGAGGCCAGGCCGGGCAGCGGCTACGGCGGCGGGCACCCCCCTTCCCCGACGCCGATCA
GCCCAGCCCCCAAGCACGAGAAGCCACCCAAGGGGCACAAGCCCCCTCACCACCACCACC
ACGCCAAGCCACCGGTCGGCTCCCAAGCGCCGCCCACCTACAGCCCCCCGACGGCTAAGC
CTACCCCTCCGGCCCCTAAACCTGCACCACCCACCTACGCCCCCATCCCGAAGCCGCCGA
AGCCATCTCCTCCGGCGTACCACCCTACGCCCAAGCCTGCACCTCCCACGTACAAACCAC
CAACCCAGCCTAAGCCCTCGCCGCCGGCGTACAAGCCAGCCCCCAAGGTCTCACCGCCTG
CGTACAAGCCAGCCCCCAAGGTCTCACCGCCGGCGTACAAGCCTGCTCCCAAGGTCTCAC
CGCCCGCGTACAAGCCAGCCCCCAAGGTATCGCCGCCAGCGTACAAGCCTTCCCCCAAGG
TCTCGCCGCCGGCGTACAAGCCTGCCCCCAAGGTCTCGCCGCCGGCGTACAAGCCAGCTC
CCAAGGTCTCTCCGCCGGCTTACAAGCCCGCCCCCAAGGTCTCACCGCCAGCTTACAAGC
CCGTCCCCAAGCCCTCACCGCCGGCGCCGAAGCCGACTCCACCGCCCTACAAGCCCCCGA
CGCCCACTCCTCCGGCGCAGAAGCCCCCGACGCCCACTCCTCCGGCATACAAGCCCCCGA
CGCCCACTCCTCCGGCGCACAAGCCCCCGACGCCCACTCCTCCGGCGCACAAGCCGGCGA
CGCCTACTCCTCCGGCGCACAAGCCCCCGACGCCTACTCCTCCGGCGCACAAGCCCACGA
CACCTACTCCGGCATACAAGCCACCGACGCCTACTCCTCCGGCGGACAAGCCCCCGACGC
CGACTCCTCTGGCGCACAAGCCCCCTACGCCTACTCCTCCGGCGTACAAGGCCCCCACCC
CGAGCCCCCCGCCTCCGCCGTACCACCACTAAGATCCACCACTCCGTCAAGCTGGGAGCC
GAGAAAAGCGGTCGAGAAGAGTTGTGCGAGCAGGCCAAGAAGAGCCACGTACGTACGGCG
TCGTTGATCCTCCTGCGGTGTGTGTTGCTGCCGAGCTAGCTAGGGCCGATCTCTCAGGAG
ATGGAATAATGCAGATGATGGCTCCCGCCATTAGTTATCTTACCAGCTTAAGTATTGTGT
TCGTCCAGTCTTAGCGTCTGTGTTGTTAGTGTCGCGATGTTGCCAGTGTGGCTGTAAAAC
CATTGATCAAAGGTGTTGTTGCCTGTTGCATGTAACGTGATCGCGTCTATGTTTTGCTGT
TCTTCAAAAAAAAAAAAAAAAATGGGACGAGATGTGATGTTTGCATGCCACTGAGGTTAC
ATAAAAAAAAAAACATTGAGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_15599 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None